Jatropha Genome Database
- JcCA0088501.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0088501.10 + phase: 2 /partial
(96 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID D... 167 1e-42
AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6 (NINE-CIS-EPOXYCAR... 84 2e-17
AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2 (NINE-CIS-EPOXYCAR... 82 7e-17
AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5 (NINE-CIS-EPOXYCAR... 82 7e-17
AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1 (CARO... 80 2e-16
AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9 (NINE-CIS-EPOXYCAR... 75 8e-15
AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3 (NINE-... 67 2e-12
>AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID
DIOXYGENASE 4) | chr4:10481835-10483622 FORWARD
Length = 595
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/95 (82%), Positives = 85/95 (89%)
Query: 1 KGDRRECTVAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMD 60
KGDR +CTVA R+YG CYGGEPFFVAR P NPEAEEDDGY+V+YVHDE+ GESKFLVMD
Sbjct: 501 KGDRDDCTVARRMYGSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMD 560
Query: 61 AKSPNLDIVAAVKLPRRVPYGFHGLFVXESDLKKL 95
AKSP L+IVAAV+LPRRVPYGFHGLFV ESDL KL
Sbjct: 561 AKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNKL 595
>AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6);
9-cis-epoxycarotenoid dioxygenase | chr3:8761439-8763172
FORWARD
Length = 577
Score = 83.6 bits (205), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
Query: 1 KGDRRECTVAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMD 60
K D + TV+ YG +GGEP FV PE E EED GY++ +V DE ES+F+V+D
Sbjct: 487 KVDIQNGTVSEFNYGPSRFGGEPCFV---PEG-EGEEDKGYVMGFVRDEEKDESEFVVVD 542
Query: 61 AKSPNLDIVAAVKLPRRVPYGFHGLFVXESDLKK 94
A ++ VAAV+LP RVPYGFHG FV E+ LK+
Sbjct: 543 AT--DMKQVAAVRLPERVPYGFHGTFVSENQLKE 574
>AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2);
9-cis-epoxycarotenoid dioxygenase |
chr4:10142672-10144423 FORWARD
Length = 583
Score = 82.0 bits (201), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 13 IYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAV 72
IYG YGGEPFF+ N E EDDGY+ +VHDE S+ +++A NL + A +
Sbjct: 502 IYGGEKYGGEPFFLPGNSGNGEENEDDGYIFCHVHDEETKTSELQIINAV--NLKLEATI 559
Query: 73 KLPRRVPYGFHGLFVXESDL 92
KLP RVPYGFHG FV ++L
Sbjct: 560 KLPSRVPYGFHGTFVDSNEL 579
>AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5);
9-cis-epoxycarotenoid dioxygenase |
chr1:10571383-10573152 FORWARD
Length = 589
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 1 KGDRRECTVAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMD 60
K D V YG + YGGEPFF+ R E+ EDDGY++S+VHDE + ES+ +++
Sbjct: 498 KVDLSTGEVKNHFYGGKKYGGEPFFLPRGLES--DGEDDGYIMSFVHDEESWESELHIVN 555
Query: 61 AKSPNLDIVAAVKLPRRVPYGFHGLFVXESDL 92
A + L++ A VKLP RVPYGFHG FV +D+
Sbjct: 556 AVT--LELEATVKLPSRVPYGFHGTFVNSADM 585
>AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1
(CAROTENOID CLEAVAGE DIOXYGENASE 1);
9-cis-epoxycarotenoid dioxygenase |
chr3:23452940-23455896 FORWARD
Length = 538
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 15 GERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAVKL 74
GE YG E +V R+ AEEDDGYL+ +VHDE G+S V+DAK+ + + VA V+L
Sbjct: 459 GEGRYGSEAIYVPRE----TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVEL 514
Query: 75 PRRVPYGFHGLFVXESDLKK 94
P RVPYGFH LFV E L++
Sbjct: 515 PHRVPYGFHALFVTEEQLQE 534
>AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9);
9-cis-epoxycarotenoid dioxygenase |
chr1:29490895-29492868 REVERSE
Length = 657
Score = 75.1 bits (183), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 6/82 (7%)
Query: 13 IYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMDAKSPNLDIVAAV 72
IYGE YGGEP F+ + + EED GY++ +VHDE +S+ +++A N+ + A V
Sbjct: 578 IYGEGKYGGEPLFLP----SGDGEEDGGYIMVFVHDEEKVKSELQLINAV--NMKLEATV 631
Query: 73 KLPRRVPYGFHGLFVXESDLKK 94
LP RVPYGFHG F+ + DL K
Sbjct: 632 TLPSRVPYGFHGTFISKEDLSK 653
>AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3);
9-cis-epoxycarotenoid dioxygenase | chr3:4831678-4833477
REVERSE
Length = 599
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
Query: 1 KGDRRECTVAARIYGERCYGGEPFFVARQPENPEAEEDDGYLVSYVHDEINGESKFLVMD 60
K D V +YG+ YGGEP F+ + EED+GY++ +VHDE +S+ +++
Sbjct: 509 KVDLTTGEVKKHLYGDNRYGGEPLFLPGE----GGEEDEGYILCFVHDEKTWKSELQIVN 564
Query: 61 AKSPNLDIVAAVKLPRRVPYGFHGLFVXESDLKK 94
A S L++ A VKLP RVPYGFHG F+ DL K
Sbjct: 565 AVS--LEVEATVKLPSRVPYGFHGTFIGADDLAK 596