Jatropha Genome Database

JcCA0081341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.30 - phase: 0 
         (156 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03905.1 | Symbols:  | hesB-like domain-containing protein | ...   200   4e-52
AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localize...    74   3e-14
AT2G16710.1 | Symbols:  | hesB-like domain-containing protein | ...    65   2e-11
AT2G36260.1 | Symbols:  | iron-sulfur cluster assembly complex p...    63   9e-11

>AT5G03905.1 | Symbols:  | hesB-like domain-containing protein |
           chr5:1052728-1054041 FORWARD
          Length = 158

 Score =  200 bits (508), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/160 (61%), Positives = 118/160 (73%), Gaps = 8/160 (5%)

Query: 1   MSRSSLIHRITPFFISRIRQNHRXXX-----XXXXXXXXXXXXXXXXXDDAIHLTDNCVR 55
           MSRS L+ R+ P+   RIR+NHR                         +D +HL+DNC+R
Sbjct: 1   MSRS-LVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSNDVVHLSDNCIR 59

Query: 56  RMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREGIKLVVDNISY 115
           RMKELQ+SE   ++K+LRLGVETGGCSGFQY F+LDN+ N DDRVFE+ G+KLVVDN+SY
Sbjct: 60  RMKELQSSE--PEKKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDNVSY 117

Query: 116 DFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMVK 155
           D VKGATIDY EELIR+AFVV +NPSAVGGCSCKSSFMVK
Sbjct: 118 DLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMVK 157


>AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localized
           IscA-like protein); structural molecule |
           chr1:3460160-3461340 REVERSE
          Length = 180

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 5/112 (4%)

Query: 46  AIHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINL--DDRVFER 103
           AI L++N ++ + ++++  G  ++  LR+GV+ GGCSG  Y  D +N+ N   DD   E 
Sbjct: 71  AISLSENALKHLSKMRSERG--EDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEY 128

Query: 104 EGIKLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMVK 155
           +G  +V D  S  F+ G  +DY + LI   F  + NP+A   C C  SF  +
Sbjct: 129 QGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFS-NPNATQTCGCGKSFAAE 179


>AT2G16710.1 | Symbols:  | hesB-like domain-containing protein |
           chr2:7248294-7250013 FORWARD
          Length = 137

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 47  IHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREGI 106
           + LTD    R+  L        +  LRLGV+  GC+G  Y  +  ++    D + E +G+
Sbjct: 23  LTLTDEAASRVHHLLQQR---QKPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEEKGV 79

Query: 107 KLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSFMV 154
           +++V+  +   V G  +D+V++ +RS FV  INP++ G C C  SFM 
Sbjct: 80  RILVEPKALMHVIGTKMDFVDDKLRSEFVF-INPNSQGQCGCGESFMT 126


>AT2G36260.1 | Symbols:  | iron-sulfur cluster assembly complex
           protein, putative | chr2:15202786-15203500 FORWARD
          Length = 109

 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)

Query: 47  IHLTDNCVRRMKELQASEGSADEKLLRLGVETGGCSGFQYVFDLDNKINLDDRVFEREGI 106
           + L+D    R+++L   +    +  LRL VE  GC+G  YV +   +    D V E +G+
Sbjct: 6   LALSDTAAARIRQLLQHQ---QKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKGV 62

Query: 107 KLVVDNISYDFVKGATIDYVEELIRSAFVVTINPSAVGGCSCKSSF 152
           K++VD  +   V G  +D+V++ +RS FV  +NP+A   C C  SF
Sbjct: 63  KILVDPKAVMHVIGTEMDFVDDKLRSEFVF-VNPNAT-KCGCGESF 106