Jatropha Genome Database

JcCA0081341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.10 + phase: 2 /partial
         (70 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08360.1 | Symbols:  | 60S ribosomal protein L10A (RPL10aA) |...   117   2e-27
AT5G22440.2 | Symbols:  | 60S ribosomal protein L10A (RPL10aC) |...   116   3e-27
AT5G22440.1 | Symbols:  | 60S ribosomal protein L10A (RPL10aC) |...   116   3e-27
AT2G27530.2 | Symbols: PGY1 | PGY1 (PIGGYBACK1); RNA binding / s...   116   4e-27
AT2G27530.1 | Symbols: PGY1 | PGY1 (PIGGYBACK1); RNA binding / s...   116   4e-27

>AT1G08360.1 | Symbols:  | 60S ribosomal protein L10A (RPL10aA) |
          chr1:2636231-2637694 FORWARD
          Length = 216

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 59/70 (84%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+T+  +S+   RNF  TIELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72


>AT5G22440.2 | Symbols:  | 60S ribosomal protein L10A (RPL10aC) |
          chr5:7435328-7436486 REVERSE
          Length = 217

 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 60/71 (84%), Gaps = 1/71 (1%)

Query: 1  KLQSYTLREVISTVVTRSKNGN-RNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPK 59
          KLQS  +RE IS+++T  K    RNFT TIELQIGLKNYDPQKDKR SGSVKLPH+PRPK
Sbjct: 3  KLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPK 62

Query: 60 MKICMLGDAQH 70
          MKICMLGDAQH
Sbjct: 63 MKICMLGDAQH 73


>AT5G22440.1 | Symbols:  | 60S ribosomal protein L10A (RPL10aC) |
          chr5:7435328-7436486 REVERSE
          Length = 217

 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 60/71 (84%), Gaps = 1/71 (1%)

Query: 1  KLQSYTLREVISTVVTRSKNGN-RNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPK 59
          KLQS  +RE IS+++T  K    RNFT TIELQIGLKNYDPQKDKR SGSVKLPH+PRPK
Sbjct: 3  KLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPK 62

Query: 60 MKICMLGDAQH 70
          MKICMLGDAQH
Sbjct: 63 MKICMLGDAQH 73


>AT2G27530.2 | Symbols: PGY1 | PGY1 (PIGGYBACK1); RNA binding /
          structural constituent of ribosome |
          chr2:11763443-11764570 REVERSE
          Length = 216

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+T+  +S+   RNF  T+ELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72


>AT2G27530.1 | Symbols: PGY1 | PGY1 (PIGGYBACK1); RNA binding /
          structural constituent of ribosome |
          chr2:11763443-11764570 REVERSE
          Length = 216

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 1  KLQSYTLREVISTVVTRSKNGNRNFTGTIELQIGLKNYDPQKDKRSSGSVKLPHIPRPKM 60
          KLQS  +RE I+T+  +S+   RNF  T+ELQIGLKNYDPQKDKR SGSVKLPHIPRPKM
Sbjct: 3  KLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62

Query: 61 KICMLGDAQH 70
          KICMLGDAQH
Sbjct: 63 KICMLGDAQH 72