Jatropha Genome Database

JcCA0081161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081161.20 - phase: 0 
         (367 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17265.1 | Symbols: HSK | HSK (HOMOSERINE KINASE); homoserine...   477   e-135
AT4G35295.1 | Symbols:  | homoserine kinase, putative / HSK, put...    74   2e-13

>AT2G17265.1 | Symbols: HSK | HSK (HOMOSERINE KINASE); homoserine
           kinase | chr2:7508606-7509718 FORWARD
          Length = 370

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/370 (67%), Positives = 291/370 (78%), Gaps = 8/370 (2%)

Query: 1   MAAICFLSPVKPITFSSSVHSKRSPLF------RCNFSLPTITTTEPEPVYTSVRSFAPA 54
           MA++CF SP KPI++     +   PLF      RC  S+ T+   EPEPV+ SV++FAPA
Sbjct: 1   MASLCFQSPSKPISYFQPKSNPSPPLFAKVSVFRCRASVQTLVAVEPEPVFVSVKTFAPA 60

Query: 55  TVANLGPGFDFLGCAVDGLGDFVSVRIDPSVHPGEISISDITGNHACKKLSKDPLRNCAG 114
           TVANLGPGFDFLGCAVDGLGD V++R+DPSV  GE+SIS+ITG     KLS +PLRNCAG
Sbjct: 61  TVANLGPGFDFLGCAVDGLGDHVTLRVDPSVRAGEVSISEITGT--TTKLSTNPLRNCAG 118

Query: 115 ISAIATMKMLNIRSVGLSLTLEKGLPXXXXXXXXXXXXXXXXXXXNEIFGGKLEVKDLIL 174
           I+AIATMKML IRSVGLSL L KGLP                   NEIFG KL    L+L
Sbjct: 119 IAAIATMKMLGIRSVGLSLDLHKGLPLGSGLGSSAASAAAAAVAVNEIFGRKLGSDQLVL 178

Query: 175 AGLESEAKVSGYHADNIAPAIMGGFVLINSYDPLELMSLKFPGEKELFFVLVTPEFEAPT 234
           AGLESEAKVSGYHADNIAPAIMGGFVLI +Y+PL+L  L+FP +K+LFFVLV+P+FEAPT
Sbjct: 179 AGLESEAKVSGYHADNIAPAIMGGFVLIRNYEPLDLKPLRFPSDKDLFFVLVSPDFEAPT 238

Query: 235 KKMRAALPEEIGMPHHVWNCSQAGALVASVLQGDLMGLGKALSNDKIVEPKRAPLIPGME 294
           KKMRAALP EI M HHVWN SQA ALVA+VL+GD + LGKALS+DKIVEP RAPLIPGME
Sbjct: 239 KKMRAALPTEIPMVHHVWNSSQAAALVAAVLEGDAVMLGKALSSDKIVEPTRAPLIPGME 298

Query: 295 EVKKAAIRAGAFGCTISGAGPTAVAVIDNEERGKEIGERMVEAFLKEGNLKAVSLVKRLD 354
            VKKAA+ AGAFGCTISGAGPTAVAVID+EE+G+ IGE+MVEAF K G+LK+V+ VK+LD
Sbjct: 299 AVKKAALEAGAFGCTISGAGPTAVAVIDSEEKGQVIGEKMVEAFWKVGHLKSVASVKKLD 358

Query: 355 RVGARLIGSV 364
            VGARL+ SV
Sbjct: 359 NVGARLVNSV 368


>AT4G35295.1 | Symbols:  | homoserine kinase, putative / HSK,
           putative | chr4:16795333-16796223 FORWARD
          Length = 111

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 5/62 (8%)

Query: 303 AGAFGCTISGAGPTAVAVIDNEERGKEIGERMVEAFLKEGNLKAVSLVKRLDRVGARLIG 362
           AGAFG TI     TAVAVID  E+G EIGE+MV+ FLK GNLK+ + VK+LD+VGARLI 
Sbjct: 55  AGAFGRTI-----TAVAVIDTAEKGYEIGEKMVQVFLKIGNLKSTASVKKLDKVGARLIE 109

Query: 363 SV 364
           S+
Sbjct: 110 SM 111