Jatropha Genome Database

JcCA0081131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081131.20 + phase: 0 
         (253 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76070.1 | Symbols:  | unknown protein | chr1:28546617-285474...   141   4e-34
AT1G20310.1 | Symbols:  | unknown protein | chr1:7032308-7033030...   101   3e-22

>AT1G76070.1 | Symbols:  | unknown protein | chr1:28546617-28547435
           FORWARD
          Length = 272

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 136/261 (52%), Gaps = 40/261 (15%)

Query: 14  FLPKAASAVYFHN-PPFSPNRDRRSDNNYCHRLKAHVGKGFSGPFVSMIPDEVRRKPKNG 72
            LPKA S  + H  PPFSP RD   +N+  H   A     FSGP V ++P+  R +    
Sbjct: 21  MLPKAMS--FGHRVPPFSPGRDLHHNNH--HNYTAANKMFFSGPMVPLVPNAARVRRNKS 76

Query: 73  SFETQEPTSPKVSCIGQIK-HKKKMVNKTKRTSPPKEIKAVS-------SPRDVKKHASK 124
                EPTSPKVSCIGQIK  K K     K  +P   I  +S       +  D K   SK
Sbjct: 77  DAVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSLTKEDEKGRLSK 136

Query: 125 FKRLFSISAKPTAGRRSD-------ASIYDRPPL----SDRAPSLGQMKRFASGRDTFSN 173
            K +FS S  P +GR +         S  D  P+    +   PSLGQMK+FAS RD   +
Sbjct: 137 IKSIFSFS--PASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSLGQMKKFASSRDALGD 194

Query: 174 FDWTAQITPVESD----HRDYSSDEDDR----MYCHQGEEDEVIIPFSAPMLIGSGAALQ 225
           FDW  ++   E      HR Y SD+D R     Y    +ED++IIPFSAP+       L+
Sbjct: 195 FDWAVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDDIIIPFSAPL------GLK 248

Query: 226 PRKEVNLWKRRTMNPPKPLQL 246
           P+KEVNLWKRRTM+PPKPL L
Sbjct: 249 PKKEVNLWKRRTMDPPKPLHL 269


>AT1G20310.1 | Symbols:  | unknown protein | chr1:7032308-7033030
           FORWARD
          Length = 240

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 137/272 (50%), Gaps = 60/272 (22%)

Query: 1   MEKQPKSKNNILKF--LPKAASAVYFHNPPFSPNRDRRSDNNYCHRLKAHVGKG--FSGP 56
           MEK   S N   KF  + + A ++     PFSP RD      + HR  +   +G  FS P
Sbjct: 1   MEKASNS-NKSTKFSKMLQRAMSIGHSAAPFSPRRD-----FHQHRTTSTANRGIFFSSP 54

Query: 57  FVSMIPDEVRRKPKNGSFET--QEPTSPKVSCIGQIKHKKKMVNKTKRTSPPKEIKAVSS 114
              ++P   R + +N  +E    EPTSPKVSCIGQ+K  +    + K+   PK +K  SS
Sbjct: 55  ---LVPTAARVR-RNTKYEAVFAEPTSPKVSCIGQVKLARPKCPE-KKNKAPKNLKTASS 109

Query: 115 PRD--VKKH----ASKFKRLFSISAKPTAGRRSDASIYDRP-----PLSD-----RAPSL 158
                +K+      SK KR+FS+ + P+  R+S+++ +        P+++      APSL
Sbjct: 110 LSSCVIKEEDNGSFSKLKRIFSMRSYPS--RKSNSTAFAAAAAREHPIAEVDAVTAAPSL 167

Query: 159 GQMKRFASGRDTFSNFDWTAQITPVESDHRDYSSDEDDRMYCHQGEEDEVIIPFSAPMLI 218
           G MK+FAS R+    FDWT Q+                     + E+++V+IP S  + +
Sbjct: 168 GAMKKFASSREALGGFDWTVQM---------------------KREKEDVMIPCSVGIPL 206

Query: 219 GSGAAL----QPRKEVNLWKRRTMNPPKPLQL 246
                L    +P+ EVNLWKRRTM+ PKPLQ+
Sbjct: 207 TQLEDLSLCPKPKSEVNLWKRRTMDRPKPLQV 238