Jatropha Genome Database

JcCA0080751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.20 - phase: 0 /partial
         (413 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04865.1 | Symbols:  | unknown protein | chr2:1712149-1714599...    54   1e-07

>AT2G04865.1 | Symbols:  | unknown protein | chr2:1712149-1714599
           FORWARD
          Length = 667

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 29/237 (12%)

Query: 22  LDPPMRARVVAAGFGDYAAGLRRTQP-HFPPAMRYALMERWNDCTHTLVFGFGKMTLTPV 80
           L P     V  AGFG     LRR         +  AL+ERW   T+T  F  G+MT+T  
Sbjct: 49  LKPKQIELVERAGFG----FLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLE 104

Query: 81  DYAAITGLHFTGPVPPLDARYQTVAIGAQLVRSLLGVTTQTRYTVQGCMSYETVFRFWAE 140
           D A + GL   G  P +   Y T    + +    LG +  +     G +        W +
Sbjct: 105 DIALLLGLGIDGK-PVIGLTYTTC---SAVCERYLGKSPASNSASGGMVKLS-----WLK 155

Query: 141 RIRTRLEAWRELPEDVRPAAPAYTREERDQAAWSFLFYIISSQLLCTSQNKGDPAV-LEC 199
                 + + E P+D        + EE ++   ++L Y++ S +  T+     P + L  
Sbjct: 156 ------DNFSECPDDA-------SFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPL 202

Query: 200 LRDLSQVGSFDWATLGLAHLYHGLDVWTHGSGESNWLFIRPLEVWSYEYCIYPGGPS 256
             D    G+F W    LA LY  L   +  S  +    +  L+ WSY Y +  G P 
Sbjct: 203 FEDFDDAGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSY-YHLNIGRPK 258