Jatropha Genome Database

JcCA0080751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080751.10 + phase: 2 /pseudo/partial
         (473 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12930.1 | Symbols:  | importin-related | chr1:4398588-440549...   464   e-131
AT5G62600.1 | Symbols:  | transportin-SR-related | chr5:25123337...    74   2e-13

>AT1G12930.1 | Symbols:  | importin-related | chr1:4398588-4405495
           REVERSE
          Length = 1005

 Score =  464 bits (1194), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/436 (59%), Positives = 325/436 (74%), Gaps = 7/436 (1%)

Query: 37  QIQSEGYYLQLGVKDALLNALLVAAKRFSSGPPXXXXXXXXXXXXXXXXXXEHGKPIEQL 96
           +IQ+E   LQ   KDALLNALL+AAKR+SSG P                   + KP ++L
Sbjct: 68  KIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHSDPYSKPFDKL 127

Query: 97  FYSLRTLQNQDDSNMAVLEMLTVLPEEVVDTQNADGNISPAHRSQYGQELLSHTPTVLEF 156
            ++L+ LQ  DD N+ +LE+LTVLPEE+ DT++       +H S   QELLSHT  VL+F
Sbjct: 128 MFALQNLQAHDDGNVVLLELLTVLPEEISDTRHF------SHHSDLRQELLSHTSMVLDF 181

Query: 157 LLEQSQKTYDGGIQLHERNRKVLRCLLSWVRAGCFSEIPQGSLPTHPLLNFVFNSLQVSS 216
           LL+QS+  +   +  H+ NRK+LRCLLSWVRAGCFSEIPQG++P+HPLLN+VFN+LQ  +
Sbjct: 182 LLQQSENQFVSPLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPLLNYVFNALQ-GT 240

Query: 217 SFDLAIEVLVELASRHEGLPQVLLCRVHFLKEVLLLPALNNGDEKIISGLACLMSEIGQA 276
           +FDLAIEVLVEL +RHE LPQVLL +V FL++ LL PAL N D KIISGLACLMSEIGQA
Sbjct: 241 TFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIISGLACLMSEIGQA 300

Query: 277 APSLIVEASVEALALADSLLSCVAFPSEDWEIADSTLQFWSTLASYILSPDTESSKNGKH 336
           AP LIVEAS EAL L D++LSCV FPSEDWEIADST+QFWST A+YILS       +   
Sbjct: 301 APCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYILSLGGNRQNDRTR 360

Query: 337 VEDVFFSVFSALLDALLLRAQVDESTFNDDSGMLDLPDGLVQFRMNLAELLVDICQLLRP 396
           V+D F  VFSAL+DAL+LRAQVDE T +D+S  LDLPDGL+ FR NL ELLVDICQLL P
Sbjct: 361 VKDTFLPVFSALVDALVLRAQVDEFTSSDESPGLDLPDGLLHFRNNLLELLVDICQLLHP 420

Query: 397 VTFVQKLFFGGWASVNIPVPWKEVEAKLFALNVVSEVVLQEAQTFDFSVIIQLATMLSIR 456
            TFV KLFFGG  S ++ +P +E+EAKLFAL  VSE++LQE + FDF++I+QL +  S+R
Sbjct: 421 TTFVSKLFFGGVPSSSVSMPLREIEAKLFALTAVSEIILQEGEAFDFALIMQLVSAFSVR 480

Query: 457 PSDKLKGFMCIVCQTV 472
           PS +LKGF+ +V +++
Sbjct: 481 PSSELKGFISVVYRSL 496


>AT5G62600.1 | Symbols:  | transportin-SR-related |
           chr5:25123337-25132473 REVERSE
          Length = 958

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 148/351 (42%), Gaps = 58/351 (16%)

Query: 114 LEMLTVLPEEVVDTQNADGNISPAHRSQYGQELLSHTPTVLEFLLEQSQKTYDGGIQLHE 173
           LE+LTVLPEE  + + A     P  R Q+ +EL S     L  L           +++ E
Sbjct: 145 LELLTVLPEETFNYKIA---ARPDRRRQFEKELTSQMEAALSIL--------SACLKISE 193

Query: 174 RNRKVLRCLLSWVRAGCFSEIPQGSLPTHPLLNFVFNSLQVSSSFDLAIEVLVEL----A 229
              +VL    SW+R      IP   L  HPL++   +SL      + ++ V+ EL    A
Sbjct: 194 LKEQVLEAFASWLRLR--HGIPGTVLACHPLVHAALSSLNCDPLSEASVNVISELIHHTA 251

Query: 230 SRHEG------------LPQVLLCRVHFLKEVLLLPALNNGDEKIISGLACLMSEIGQAA 277
           S   G            +PQ+L  + H           ++ DE+ +  +  L +++G + 
Sbjct: 252 SPSSGGISAQTPLIQVIVPQILSLQAHLRD--------SSKDEEDVKAIGRLFADVGDSY 303

Query: 278 PSLIVEASVEALALADSLLSCVAFPSEDWEIADSTLQFWSTLASYILSPDTESSKNGK-- 335
             LI   S E + +  +LL   A P  +++IA  T  FW +L   +   ++ SS   +  
Sbjct: 304 VELIATGSDEPMVIVHALLEVTAHP--EFDIASMTFNFWHSLQLMLTKRESYSSLGSEAS 361

Query: 336 -HVE-----DVFFSVFSALLDALLLRAQVDESTFNDDSGML--DLPDGLVQFRMNLAELL 387
             VE      +F   + +L+  +  R Q  E    D  G+   DL +   Q R  +A++L
Sbjct: 362 IEVERNRRLHIFQPAYQSLVSLVGFRVQYPE----DYQGLSYEDLKE-FKQTRYAVADVL 416

Query: 388 VDICQLLRPVTFVQ----KLFFGGWASVNIPVPWKEVEAKLFALNVVSEVV 434
           +D   +L   T ++    KL      + N    W+  EA LF +  +S  V
Sbjct: 417 IDAALILGGDTTLKILYMKLLEANAQTGNNFQDWRPAEAILFCIWAISNYV 467