Jatropha Genome Database

JcCA0080721.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.40 - phase: 2 /pseudo/partial
         (176 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12600.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   132   9e-32
AT4G23010.2 | Symbols: ATUTR2, UTR2 | UDP-galactose transporter-...   129   1e-30
AT4G23010.1 | Symbols: ATUTR2, UTR2 | UDP-galactose transporter-...   129   1e-30

>AT1G12600.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: leaf whorl,
           petal, male gametophyte, flower, pollen tube; EXPRESSED
           DURING: L mature pollen stage, 4 anthesis, petal
           differentiation and expansion stage; CONTAINS InterPro
           DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST
           Arabidopsis thaliana protein match is: UDP-galactose
           transporter-related (TAIR:AT4G23010.1); Has 943 Blast
           hits to 943 proteins in 196 species: Archae - 2;
           Bacteria - 55; Metazoa - 506; Fungi - 148; Plants - 112;
           Viruses - 0; Other Eukaryotes - 120 (source: NCBI
           BLink). | chr1:4286414-4288859 REVERSE
          Length = 349

 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 68/81 (83%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVMVMGAFIPGLRRKYP HEYISA+           ADA TSPNFSIIGV+MISGALI
Sbjct: 122 VLPVMVMGAFIPGLRRKYPVHEYISAMLLVIGLILFTLADAHTSPNFSIIGVMMISGALI 181

Query: 64  MDSFLGNLQEAIFTMNPETTQ 84
           MD+FLGNLQEAIFTMNPETTQ
Sbjct: 182 MDAFLGNLQEAIFTMNPETTQ 202


>AT4G23010.2 | Symbols: ATUTR2, UTR2 | UDP-galactose
           transporter-related | chr4:12060318-12062486 REVERSE
          Length = 362

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 67/81 (82%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA            ADA+ SPNFS+IG++MI+GALI
Sbjct: 119 VLPVMIMGAFIPGLRRKYPVHEYISAFLLVLGLILFTLADAQMSPNFSMIGIMMITGALI 178

Query: 64  MDSFLGNLQEAIFTMNPETTQ 84
           MD+FLGNLQEAIFTMNPETTQ
Sbjct: 179 MDAFLGNLQEAIFTMNPETTQ 199


>AT4G23010.1 | Symbols: ATUTR2, UTR2 | UDP-galactose
           transporter-related | chr4:12060318-12062486 REVERSE
          Length = 345

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 67/81 (82%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA            ADA+ SPNFS+IG++MI+GALI
Sbjct: 119 VLPVMIMGAFIPGLRRKYPVHEYISAFLLVLGLILFTLADAQMSPNFSMIGIMMITGALI 178

Query: 64  MDSFLGNLQEAIFTMNPETTQ 84
           MD+FLGNLQEAIFTMNPETTQ
Sbjct: 179 MDAFLGNLQEAIFTMNPETTQ 199