Jatropha Genome Database
- JcCA0080621.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0080621.20 - phase: 0 /pseudo
(521 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03840.1 | Symbols: MGP | MGP (Magpie); nucleic acid binding ... 267 1e-71
AT5G44160.1 | Symbols: NUC | NUC (nutcracker); nucleic acid bind... 265 4e-71
AT5G66730.1 | Symbols: | zinc finger (C2H2 type) family protein... 265 4e-71
AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana Ind... 260 1e-69
AT1G03840.2 | Symbols: MGP | MGP (Magpie); nucleic acid binding ... 258 7e-69
AT5G03150.1 | Symbols: JKD | JKD (JACKDAW); nucleic acid binding... 256 3e-68
AT2G02080.1 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana Ind... 256 4e-68
AT1G14580.1 | Symbols: | zinc finger (C2H2 type) family protein... 253 2e-67
AT3G45260.1 | Symbols: | zinc finger (C2H2 type) family protein... 252 5e-67
AT2G02070.1 | Symbols: AtIDD5 | AtIDD5 (Arabidopsis thaliana Ind... 251 6e-67
AT1G55110.1 | Symbols: AtIDD7 | AtIDD7 (Arabidopsis thaliana Ind... 250 1e-66
AT3G13810.1 | Symbols: AtIDD11 | AtIDD11 (Arabidopsis thaliana I... 249 2e-66
AT4G02670.1 | Symbols: AtIDD12 | AtIDD12 (Arabidopsis thaliana I... 245 6e-65
AT5G60470.1 | Symbols: | nucleic acid binding / transcription f... 227 2e-59
AT2G02080.2 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana Ind... 218 9e-57
AT1G68130.1 | Symbols: AtIDD14 | AtIDD14 (Arabidopsis thaliana I... 212 6e-55
AT2G01940.1 | Symbols: SGR5, ATIDD15 | nucleic acid binding / tr... 209 3e-54
AT2G01940.3 | Symbols: SGR5, ATIDD15 | nucleic acid binding / tr... 202 4e-52
AT1G25250.1 | Symbols: AtIDD16 | AtIDD16 (Arabidopsis thaliana I... 195 5e-50
AT1G68130.2 | Symbols: AtIDD14 | AtIDD14 (Arabidopsis thaliana I... 137 2e-32
AT2G01940.2 | Symbols: SGR5, ATIDD15 | nucleic acid binding / tr... 135 8e-32
AT5G22890.1 | Symbols: | zinc finger (C2H2 type) family protein... 79 1e-14
AT1G34370.1 | Symbols: STOP1 | STOP1 (sensitive to proton rhizot... 78 1e-14
AT1G34370.2 | Symbols: STOP1 | STOP1 (sensitive to proton rhizot... 78 1e-14
AT1G34370.3 | Symbols: STOP1 | STOP1 (sensitive to proton rhizot... 77 3e-14
AT3G20880.1 | Symbols: | zinc finger (C2H2 type) protein (WIP4)... 75 7e-14
AT1G51220.1 | Symbols: | zinc finger (C2H2 type) protein (WIP5)... 74 2e-13
AT3G57670.1 | Symbols: NTT | NTT (NO TRANSMITTING TRACT); nuclei... 72 8e-13
AT1G13290.1 | Symbols: DOT5 | DOT5 (DEFECTIVELY ORGANIZED TRIBUT... 67 3e-11
AT1G34790.1 | Symbols: TT1 | TT1 (transparent testa 1); transcri... 66 7e-11
AT1G08290.1 | Symbols: | zinc finger (C2H2 type) protein (WIP3)... 65 1e-10
>AT1G03840.1 | Symbols: MGP | MGP (Magpie); nucleic acid binding /
protein binding / transcription factor/ zinc ion binding
| chr1:967596-970058 REVERSE
Length = 506
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 125/147 (85%)
Query: 59 PQTVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 118
P VKKKRNLPG PDP AEVIALSP TLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPW
Sbjct: 37 PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPW 96
Query: 119 KLRQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYA 178
KL+QRT+ EVRKRVY+CPE +CVHH+P RALGDLTGIKKHF RKHGE YA
Sbjct: 97 KLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYA 156
Query: 179 VQSDWKAHQKTCGTREYKCDCGTIFSR 205
VQSDWKAH KTCGTREY+CDCGTIFSR
Sbjct: 157 VQSDWKAHSKTCGTREYRCDCGTIFSR 183
>AT5G44160.1 | Symbols: NUC | NUC (nutcracker); nucleic acid binding
/ transcription factor/ zinc ion binding |
chr5:17773091-17775513 FORWARD
Length = 466
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 118/147 (80%), Positives = 126/147 (85%)
Query: 59 PQTVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 118
P VKKKRNLPG PDP AEVIALSPTTLMATNRF+CE+C KGFQRDQNLQLHRRGHNLPW
Sbjct: 33 PPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPW 92
Query: 119 KLRQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYA 178
KL+QRT+ EVRKRVY+CPE TCVHH+ +RALGDLTGIKKHF RKHGE YA
Sbjct: 93 KLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYA 152
Query: 179 VQSDWKAHQKTCGTREYKCDCGTIFSR 205
VQSDWKAH KTCGTREY+CDCGTIFSR
Sbjct: 153 VQSDWKAHSKTCGTREYRCDCGTIFSR 179
>AT5G66730.1 | Symbols: | zinc finger (C2H2 type) family protein |
chr5:26641914-26643883 REVERSE
Length = 500
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 118/152 (77%), Positives = 128/152 (84%), Gaps = 1/152 (0%)
Query: 55 QEQQPQTV-KKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRG 113
Q P++V KKKRNLPG PDP+AEVIALSP TLMATNRFVCEICNKGFQRDQNLQLHRRG
Sbjct: 23 QNLTPKSVGKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRG 82
Query: 114 HNLPWKLRQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXX 173
HNLPWKLRQR+T EVRK+VY+CP CVHH+P+RALGDLTGIKKHF RKHGE
Sbjct: 83 HNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKC 142
Query: 174 XXXYAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
YAVQSDWKAH K CGT+EYKCDCGT+FSR
Sbjct: 143 SKKYAVQSDWKAHSKICGTKEYKCDCGTLFSR 174
>AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana
Indeterminate(ID)-Domain 2); nucleic acid binding /
transcription factor/ zinc ion binding |
chr3:18840945-18842829 FORWARD
Length = 452
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 112/145 (77%), Positives = 124/145 (85%)
Query: 61 TVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
T KKKRNLPG PDP +EVIALSP TL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 32 TGKKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 91
Query: 121 RQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQ 180
RQ++ EV+K+VY+CPE +CVHH+P+RALGDLTGIKKHF RKHGE YAVQ
Sbjct: 92 RQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQ 151
Query: 181 SDWKAHQKTCGTREYKCDCGTIFSR 205
SDWKAH K CGT+EYKCDCGT+FSR
Sbjct: 152 SDWKAHSKICGTKEYKCDCGTLFSR 176
>AT1G03840.2 | Symbols: MGP | MGP (Magpie); nucleic acid binding /
protein binding / transcription factor/ zinc ion binding
| chr1:967596-970058 REVERSE
Length = 504
Score = 258 bits (659), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 124/147 (84%), Gaps = 2/147 (1%)
Query: 59 PQTVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 118
P VKKKRNLPG P+ AEVIALSP TLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPW
Sbjct: 37 PPLVKKKRNLPGNPE--AEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPW 94
Query: 119 KLRQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYA 178
KL+QRT+ EVRKRVY+CPE +CVHH+P RALGDLTGIKKHF RKHGE YA
Sbjct: 95 KLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYA 154
Query: 179 VQSDWKAHQKTCGTREYKCDCGTIFSR 205
VQSDWKAH KTCGTREY+CDCGTIFSR
Sbjct: 155 VQSDWKAHSKTCGTREYRCDCGTIFSR 181
>AT5G03150.1 | Symbols: JKD | JKD (JACKDAW); nucleic acid binding /
protein binding / protein homodimerization/
transcription factor/ zinc ion binding |
chr5:745849-748678 FORWARD
Length = 503
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 115/146 (78%), Positives = 126/146 (86%), Gaps = 1/146 (0%)
Query: 61 TVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
+ KKKRN PGTPDP+A+VIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 51 SAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 110
Query: 121 RQRTTTEV-RKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAV 179
+QR+ EV +K+VYICP TCVHH+ +RALGDLTGIKKH+SRKHGE YAV
Sbjct: 111 KQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAV 170
Query: 180 QSDWKAHQKTCGTREYKCDCGTIFSR 205
QSDWKAH KTCGTREYKCDCGT+FSR
Sbjct: 171 QSDWKAHAKTCGTREYKCDCGTLFSR 196
>AT2G02080.1 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana
Indeterminate(ID)-Domain 4); transcription factor |
chr2:518328-521170 REVERSE
Length = 516
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 130/153 (84%), Gaps = 4/153 (2%)
Query: 57 QQPQTV----KKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRR 112
QQP + KK+RN PG P+P+AEV+ALSP TLMATNRF+C++CNKGFQR+QNLQLHRR
Sbjct: 44 QQPNSSAPPPKKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRR 103
Query: 113 GHNLPWKLRQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXX 172
GHNLPWKL+Q++T EV+++VY+CPEPTCVHH+P+RALGDLTGIKKH+ RKHGE
Sbjct: 104 GHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEK 163
Query: 173 XXXXYAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
YAVQSDWKAH KTCGT+EY+CDCGTIFSR
Sbjct: 164 CSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSR 196
>AT1G14580.1 | Symbols: | zinc finger (C2H2 type) family protein |
chr1:4990070-4992442 FORWARD
Length = 467
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 110/155 (70%), Positives = 130/155 (83%), Gaps = 5/155 (3%)
Query: 56 EQQPQTV-----KKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLH 110
+QQP + KK+RN PG P+P+AEVIALSP T+MATNRF+CE+CNKGFQR+QNLQLH
Sbjct: 41 QQQPTSSVAPPPKKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLH 100
Query: 111 RRGHNLPWKLRQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXX 170
RRGHNLPWKL+Q++ EVR++VY+CPEP+CVHH+PARALGDLTGIKKH+ RKHGE
Sbjct: 101 RRGHNLPWKLKQKSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKC 160
Query: 171 XXXXXXYAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
YAVQSDWKAH KTCGT+EY+CDCGTIFSR
Sbjct: 161 DKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSR 195
>AT3G45260.1 | Symbols: | zinc finger (C2H2 type) family protein |
chr3:16596850-16598550 REVERSE
Length = 446
Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 123/145 (84%), Gaps = 1/145 (0%)
Query: 62 VKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLR 121
K+KRNLPG PDP+AEVIALSP +LM TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKL+
Sbjct: 38 AKRKRNLPGNPDPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLK 97
Query: 122 QRTTTE-VRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQ 180
QRT E V+K+VYICPE TCVHH+PARALGDLTGIKKHFSRKHGE YAV
Sbjct: 98 QRTNKEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVM 157
Query: 181 SDWKAHQKTCGTREYKCDCGTIFSR 205
SDWKAH K CGT+EY+CDCGT+FSR
Sbjct: 158 SDWKAHSKICGTKEYRCDCGTLFSR 182
>AT2G02070.1 | Symbols: AtIDD5 | AtIDD5 (Arabidopsis thaliana
Indeterminate(ID)-Domain 5); nucleic acid binding /
transcription factor/ zinc ion binding |
chr2:505523-509154 FORWARD
Length = 602
Score = 251 bits (642), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 106/143 (74%), Positives = 125/143 (87%)
Query: 63 KKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 122
KKKRN P TP+ +AEVIALSP TLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL+Q
Sbjct: 52 KKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 111
Query: 123 RTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSD 182
++T EV+++VY+CPEP+CVHH+P+RALGDLTGIKKH+ RKHGE YAVQSD
Sbjct: 112 KSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSD 171
Query: 183 WKAHQKTCGTREYKCDCGTIFSR 205
WKAH KTCGT+EY+CDCGT+FSR
Sbjct: 172 WKAHSKTCGTKEYRCDCGTLFSR 194
>AT1G55110.1 | Symbols: AtIDD7 | AtIDD7 (Arabidopsis thaliana
Indeterminate(ID)-Domain 7); nucleic acid binding /
transcription factor/ zinc ion binding |
chr1:20560406-20562625 REVERSE
Length = 455
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 109/146 (74%), Positives = 125/146 (85%), Gaps = 1/146 (0%)
Query: 61 TVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
++K+KRN PG PDP AEV+ALSP TLMATNRF+CE+CNKGFQRDQNLQLH+RGHNLPWKL
Sbjct: 61 SLKRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKL 120
Query: 121 RQRTTTEV-RKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAV 179
+QR+ +V RK+VY+CPEP CVHH+P+RALGDLTGIKKHF RKHGE YAV
Sbjct: 121 KQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAV 180
Query: 180 QSDWKAHQKTCGTREYKCDCGTIFSR 205
QSDWKAH KTCGT+EYKCDCGT+FSR
Sbjct: 181 QSDWKAHAKTCGTKEYKCDCGTLFSR 206
>AT3G13810.1 | Symbols: AtIDD11 | AtIDD11 (Arabidopsis thaliana
Indeterminate(ID)-Domain 11); nucleic acid binding /
transcription factor/ zinc ion binding |
chr3:4544941-4547300 FORWARD
Length = 513
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/209 (59%), Positives = 142/209 (67%), Gaps = 19/209 (9%)
Query: 1 MSNIT---GDEGSFSSGNTGDXXXXXXXXXXXXXXXXXNHFHXXXXXXXXXXXXXXXQEQ 57
MSN+T GD+ S SSGN + N+F +
Sbjct: 20 MSNLTSASGDQASVSSGNITE-------------ASGSNYFPHHQQQQEQQQQQLVVPDS 66
Query: 58 QPQTVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLP 117
Q Q KK+RN PG PDP +EVIALSP TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLP
Sbjct: 67 QTQ--KKRRNQPGNPDPESEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLP 124
Query: 118 WKLRQRTTTEV-RKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXX 176
WKL+QR+ EV RK+VY+CPE +CVHH+P+RALGDLTGIKKHF RKHGE
Sbjct: 125 WKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKK 184
Query: 177 YAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
YAVQSD KAH KTCGT+EY+CDCGT+FSR
Sbjct: 185 YAVQSDCKAHSKTCGTKEYRCDCGTLFSR 213
>AT4G02670.1 | Symbols: AtIDD12 | AtIDD12 (Arabidopsis thaliana
Indeterminate(ID)-Domain 12); nucleic acid binding /
transcription factor/ zinc ion binding |
chr4:1176190-1178489 REVERSE
Length = 402
Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 108/144 (75%), Positives = 120/144 (83%), Gaps = 1/144 (0%)
Query: 63 KKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 122
KKKR LPG PDP+AEVIALSP TL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL+Q
Sbjct: 53 KKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112
Query: 123 RTTTE-VRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQS 181
+ T E +K+VY+CPE C HH+P+RALGDLTGIKKHF RKHGE YAVQS
Sbjct: 113 KNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQS 172
Query: 182 DWKAHQKTCGTREYKCDCGTIFSR 205
DWKAH K CGTR+Y+CDCGT+FSR
Sbjct: 173 DWKAHTKICGTRDYRCDCGTLFSR 196
>AT5G60470.1 | Symbols: | nucleic acid binding / transcription
factor/ zinc ion binding | chr5:24320614-24322790
FORWARD
Length = 450
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 98/133 (73%), Positives = 113/133 (84%), Gaps = 1/133 (0%)
Query: 74 PNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTT-TEVRKRV 132
PNAEVI+LSP +LMATNRF CEICNKGFQR+QNLQLH+RGHNLPWKL+Q+T +V+K+V
Sbjct: 46 PNAEVISLSPKSLMATNRFFCEICNKGFQREQNLQLHKRGHNLPWKLKQKTNKNQVKKKV 105
Query: 133 YICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSDWKAHQKTCGT 192
YICPE +CVHH+PARALGDLTGIKKHFSRKHGE YAV SDWKAH K CG+
Sbjct: 106 YICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVISDWKAHNKICGS 165
Query: 193 REYKCDCGTIFSR 205
RE++CDCGT+FSR
Sbjct: 166 REFRCDCGTLFSR 178
>AT2G02080.2 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana
Indeterminate(ID)-Domain 4); transcription factor |
chr2:518328-520619 REVERSE
Length = 439
Score = 218 bits (554), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 105/119 (88%)
Query: 87 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPTCVHHNPA 146
MATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKL+Q++T EV+++VY+CPEPTCVHH+P+
Sbjct: 1 MATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPS 60
Query: 147 RALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
RALGDLTGIKKH+ RKHGE YAVQSDWKAH KTCGT+EY+CDCGTIFSR
Sbjct: 61 RALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSR 119
>AT1G68130.1 | Symbols: AtIDD14 | AtIDD14 (Arabidopsis thaliana
Indeterminate(ID)-Domain 14); nucleic acid binding /
transcription factor/ zinc ion binding |
chr1:25532484-25534317 FORWARD
Length = 419
Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 112/147 (76%), Gaps = 2/147 (1%)
Query: 61 TVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
T K+KR GTPDP AEV++LSP TL+ ++R+VCEICN+GFQRDQNLQ+HRR H +PWKL
Sbjct: 39 TQKRKRRPAGTPDPEAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKL 98
Query: 121 RQR-TTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXX-XXXXXXXXYA 178
+R T EVRKRVY+CPEPTC+HHNP ALGDL GIKKHF RKH YA
Sbjct: 99 LKRETNEEVRKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWICERCSKGYA 158
Query: 179 VQSDWKAHQKTCGTREYKCDCGTIFSR 205
VQSD+KAH KTCGTR + CDCG +FSR
Sbjct: 159 VQSDYKAHLKTCGTRGHSCDCGRVFSR 185
>AT2G01940.1 | Symbols: SGR5, ATIDD15 | nucleic acid binding /
transcription factor/ zinc ion binding |
chr2:432652-434917 FORWARD
Length = 445
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 93/147 (63%), Positives = 112/147 (76%), Gaps = 2/147 (1%)
Query: 61 TVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
T K+KR GTPDP+AEV++LSP TL+ ++R++CEICN+GFQRDQNLQ+HRR H +PWKL
Sbjct: 42 TQKRKRRPAGTPDPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKL 101
Query: 121 RQR-TTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXX-XXXXXXXXYA 178
+R EV+KRVY+CPEPTC+HHNP ALGDL GIKKHF RKH YA
Sbjct: 102 LKRDNNIEVKKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYA 161
Query: 179 VQSDWKAHQKTCGTREYKCDCGTIFSR 205
VQSD+KAH KTCGTR + CDCG +FSR
Sbjct: 162 VQSDYKAHLKTCGTRGHSCDCGRVFSR 188
>AT2G01940.3 | Symbols: SGR5, ATIDD15 | nucleic acid binding /
transcription factor/ zinc ion binding |
chr2:432652-434917 FORWARD
Length = 446
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 108/142 (76%), Gaps = 2/142 (1%)
Query: 61 TVKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
T K+KR GTPDP+AEV++LSP TL+ ++R++CEICN+GFQRDQNLQ+HRR H +PWKL
Sbjct: 42 TQKRKRRPAGTPDPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKL 101
Query: 121 RQR-TTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXXX-XXXXXXXXYA 178
+R EV+KRVY+CPEPTC+HHNP ALGDL GIKKHF RKH YA
Sbjct: 102 LKRDNNIEVKKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYA 161
Query: 179 VQSDWKAHQKTCGTREYKCDCG 200
VQSD+KAH KTCGTR + CDCG
Sbjct: 162 VQSDYKAHLKTCGTRGHSCDCG 183
>AT1G25250.1 | Symbols: AtIDD16 | AtIDD16 (Arabidopsis thaliana
Indeterminate(ID)-Domain 16); nucleic acid binding /
transcription factor/ zinc ion binding |
chr1:8849549-8851520 FORWARD
Length = 362
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 86/136 (63%), Positives = 104/136 (76%), Gaps = 3/136 (2%)
Query: 73 DPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL--RQRTTTEVRK 130
DP+AEV++LSP TL+ ++R+VCEICN+GFQRDQNLQ+HRR H +PWKL R + EVRK
Sbjct: 20 DPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDKKDEEVRK 79
Query: 131 RVYICPEPTCVHHNPARALGDLTGIKKHFSRKHG-EXXXXXXXXXXXYAVQSDWKAHQKT 189
RVY+CPEPTC+HH+P ALGDL GIKKHF RKH YAVQSD+KAH KT
Sbjct: 80 RVYVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSVHKQWVCERCSKGYAVQSDYKAHLKT 139
Query: 190 CGTREYKCDCGTIFSR 205
CG+R + CDCG +FSR
Sbjct: 140 CGSRGHSCDCGRVFSR 155
>AT1G68130.2 | Symbols: AtIDD14 | AtIDD14 (Arabidopsis thaliana
Indeterminate(ID)-Domain 14); nucleic acid binding /
transcription factor/ zinc ion binding |
chr1:25532843-25534317 FORWARD
Length = 333
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 71/99 (71%), Gaps = 2/99 (2%)
Query: 109 LHRRGHNLPWKLRQRTTTE-VRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXX 167
+HRR H +PWKL +R T E VRKRVY+CPEPTC+HHNP ALGDL GIKKHF RKH
Sbjct: 1 MHRRRHKVPWKLLKRETNEEVRKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHK 60
Query: 168 XXXXXXXXX-YAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
YAVQSD+KAH KTCGTR + CDCG +FSR
Sbjct: 61 QWICERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSR 99
>AT2G01940.2 | Symbols: SGR5, ATIDD15 | nucleic acid binding /
transcription factor/ zinc ion binding |
chr2:433232-434917 FORWARD
Length = 356
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Query: 109 LHRRGHNLPWKLRQR-TTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEXX 167
+HRR H +PWKL +R EV+KRVY+CPEPTC+HHNP ALGDL GIKKHF RKH
Sbjct: 1 MHRRRHKVPWKLLKRDNNIEVKKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHK 60
Query: 168 XXXXXXXXX-YAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
YAVQSD+KAH KTCGTR + CDCG +FSR
Sbjct: 61 QWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSR 99
>AT5G22890.1 | Symbols: | zinc finger (C2H2 type) family protein |
chr5:7653541-7654662 REVERSE
Length = 373
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 77 EVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTT---------- 126
+++ L L+A C+IC KGF+RD NL++H R H +K R+ +
Sbjct: 202 DILELDVADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKGGY 261
Query: 127 EVRKRVYICPEPTCV---HHNPARALGDLTGIKKHFSRKHG-EXXXXXXXXXXXYAVQSD 182
++K Y CP+ C H + L + K H+ R H + ++V SD
Sbjct: 262 SLKKHYYSCPQHGCRWNQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSD 321
Query: 183 WKAHQKTCGTREYKCDCGTIFSR 205
+ H+K CG ++ C CGT FSR
Sbjct: 322 LRTHEKHCGDIKWVCSCGTKFSR 344
>AT1G34370.1 | Symbols: STOP1 | STOP1 (sensitive to proton
rhizotoxicity 1); nucleic acid binding / transcription
factor/ zinc ion binding | chr1:12551002-12552501
FORWARD
Length = 499
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 62 VKKKRNLPGTPDPNA-EVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
V++ NLP P + E++ L ++A + C IC KGF+RD NL++H RGH +K
Sbjct: 217 VEEGENLP----PGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKT 272
Query: 121 RQRTTTEVRKRV----------YICPEPTC---VHHNPARALGDLTGIKKHFSRKHGEXX 167
++ V Y CP C H + L + +K H+ R H +
Sbjct: 273 AAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKS 332
Query: 168 XXXXXX-XXXYAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
++V +D K H+K CG ++ C CGT FSR
Sbjct: 333 FTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSR 371
>AT1G34370.2 | Symbols: STOP1 | STOP1 (sensitive to proton
rhizotoxicity 1); nucleic acid binding / transcription
factor/ zinc ion binding | chr1:12551002-12552501
FORWARD
Length = 499
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 62 VKKKRNLPGTPDPNA-EVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 120
V++ NLP P + E++ L ++A + C IC KGF+RD NL++H RGH +K
Sbjct: 217 VEEGENLP----PGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKT 272
Query: 121 RQRTTTEVRKRV----------YICPEPTC---VHHNPARALGDLTGIKKHFSRKHGEXX 167
++ V Y CP C H + L + +K H+ R H +
Sbjct: 273 AAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKS 332
Query: 168 XXXXXX-XXXYAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
++V +D K H+K CG ++ C CGT FSR
Sbjct: 333 FTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSR 371
>AT1G34370.3 | Symbols: STOP1 | STOP1 (sensitive to proton
rhizotoxicity 1); nucleic acid binding / transcription
factor/ zinc ion binding | chr1:12551449-12552501
FORWARD
Length = 350
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 17/158 (10%)
Query: 62 VKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLR 121
V++ NLP + E++ L ++A + C IC KGF+RD NL++H RGH +K
Sbjct: 68 VEEGENLPPG---SYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTA 124
Query: 122 QRTTTEVRKRV----------YICPEPTC---VHHNPARALGDLTGIKKHFSRKHGEXXX 168
++ V Y CP C H + L + +K H+ R H +
Sbjct: 125 AALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSF 184
Query: 169 XXXXX-XXXYAVQSDWKAHQKTCGTREYKCDCGTIFSR 205
++V +D K H+K CG ++ C CGT FSR
Sbjct: 185 TCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSR 222
>AT3G20880.1 | Symbols: | zinc finger (C2H2 type) protein (WIP4) |
chr3:7313759-7315792 REVERSE
Length = 412
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 86 LMATNRFVCEICNKGFQRDQNLQLHRRGHNL-----PWKLRQRTTTEVRKRVYICPEPTC 140
LM +F C +C K F R N+Q+H GH P LR T + K C P C
Sbjct: 250 LMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAPGC 309
Query: 141 ---VHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSDWKAHQKTCGTREYKC 197
+ H AR L D ++ H+ RKHG +AV+ DW+ H+K CG Y C
Sbjct: 310 KNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEKNCGKLWY-C 368
Query: 198 DCGTIF 203
CG+ F
Sbjct: 369 SCGSDF 374
>AT1G51220.1 | Symbols: | zinc finger (C2H2 type) protein (WIP5) |
chr1:18989925-18992034 REVERSE
Length = 337
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 86 LMATNRFVCEICNKGFQRDQNLQLHRRGHNL-----PWKLRQRTTTEVRKRVYICPEPTC 140
L+ +F C +C K F R N+Q+H GH P LR T + + C P C
Sbjct: 172 LIGPTQFTCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCFCCAPGC 231
Query: 141 ---VHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSDWKAHQKTCGTREYKC 197
+ H A+ L D ++ H+ RKHG +AV+ DW+ H+K CG Y C
Sbjct: 232 KNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGDWRTHEKNCGKLWY-C 290
Query: 198 DCGTIF 203
CG+ F
Sbjct: 291 SCGSDF 296
>AT3G57670.1 | Symbols: NTT | NTT (NO TRANSMITTING TRACT); nucleic
acid binding / transcription factor/ zinc ion binding |
chr3:21370936-21373121 FORWARD
Length = 383
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 86 LMATNRFVCEICNKGFQRDQNLQLHRRGHNL-----PWKLRQRTTTEVRKRVYICPEPTC 140
L+ +F C +C K F R N+Q+H GH P LR T + + C P C
Sbjct: 211 LIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGC 270
Query: 141 ---VHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSDWKAHQKTCGTREYKC 197
+ H A+ L D ++ H+ RKHG +AV+ DW+ H+K CG Y C
Sbjct: 271 RNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWY-C 329
Query: 198 DCGTIF 203
CG+ F
Sbjct: 330 ICGSDF 335
>AT1G13290.1 | Symbols: DOT5 | DOT5 (DEFECTIVELY ORGANIZED
TRIBUTARIES 5); transcription factor |
chr1:4550366-4551527 REVERSE
Length = 302
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 86 LMATNRFVCEICNKGFQRDQNLQLHRRGHNL-----PWKLR--QRTTTEVRKRVYICPE- 137
L+ +F C +CNK F R N+Q+H GH P LR + +++ +R Y C E
Sbjct: 95 LVGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCAEG 154
Query: 138 -PTCVHHNPARALGDLTGIKKHFSRKHG-EXXXXXXXXXXXYAVQSDWKAHQKTCGTREY 195
+ H ++ L D ++ H+ RKHG + +AV+ DW+ H+K CG + +
Sbjct: 155 CKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCG-KLW 213
Query: 196 KCDCGTIF 203
C CG+ F
Sbjct: 214 FCVCGSDF 221
>AT1G34790.1 | Symbols: TT1 | TT1 (transparent testa 1);
transcription factor | chr1:12763953-12765489 FORWARD
Length = 303
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 76 AEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKR---- 131
A I L+ F C +C K F R NLQ+H GH ++ + + R
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188
Query: 132 --VYICPEPTC---VHHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSDWKAH 186
Y C E C + H ++ L D ++ H+ RKHG AV+ DW+ H
Sbjct: 189 IPCYCCVE-GCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTH 247
Query: 187 QKTCGTREYKCDCGTIF 203
+K CG R + C CG+ F
Sbjct: 248 EKNCGKR-WVCVCGSDF 263
>AT1G08290.1 | Symbols: | zinc finger (C2H2 type) protein (WIP3) |
chr1:2610680-2613180 REVERSE
Length = 337
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 91 RFVCEICNKGFQRDQNLQLHRRGHNLPW-------KLRQRTTTEVRKRVYICPE--PTCV 141
+F C IC+K F R N+Q+H GH + K + +R Y C E +
Sbjct: 179 QFACSICSKTFNRYNNMQMHMWGHGSEFRKGADSLKGTIQPAAILRLPCYCCAEGCKNNI 238
Query: 142 HHNPARALGDLTGIKKHFSRKHGEXXXXXXXXXXXYAVQSDWKAHQKTCGTREYKCDCGT 201
+H ++ L D ++ H+ RKHG AV+ DW+ H+K CG Y C CG+
Sbjct: 239 NHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWRTHEKNCGKLWY-CTCGS 297
Query: 202 IF 203
F
Sbjct: 298 DF 299