Jatropha Genome Database

JcCA0080591.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.30 - phase: 0 
         (267 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP...    85   4e-17

>AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
            binding / DNA binding / chromatin binding / helicase/
            nucleic acid binding / protein binding / zinc ion binding
            | chr5:18083659-18092162 REVERSE
          Length = 2242

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 101  NLMMKMSNA---SRKDQGMVDVWLEEELDFLWIGVRRHGQGNWEAMLRDPSLSFSKHKTI 157
            N+M++  +     +K +  VD W E+ELD LWIG+RRHG GNWE +LRDP L FSK KT 
Sbjct: 1702 NIMLRTGSGIGHVQKKKTRVDAWSEDELDSLWIGIRRHGYGNWETILRDPRLKFSKFKTP 1761

Query: 158  EDLSRRWEKERLKI 171
            E L+ RWE+E+ K 
Sbjct: 1762 EYLAARWEEEQRKF 1775