Jatropha Genome Database

JcCA0080591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.20 + phase: 0 
         (440 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   552   e-157

>AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast, vacuole; EXPRESSED IN: 19 plant structures;
           EXPRESSED DURING: 11 growth stages; CONTAINS InterPro
           DOMAIN/s: Lytic transglycosylase-like, catalytic
           (InterPro:IPR008258); Has 119 Blast hits to 113 proteins
           in 24 species: Archae - 0; Bacteria - 39; Metazoa - 0;
           Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes -
           62 (source: NCBI BLink). | chr1:5570938-5573538 REVERSE
          Length = 419

 Score =  552 bits (1423), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 259/440 (58%), Positives = 331/440 (75%), Gaps = 21/440 (4%)

Query: 1   MGISFKYWDECVEPQDMEAMWREPEVLTEWLDAGETKGQKVHLSRDPDGQPYLTQTEMKA 60
           M  SF +W++CVEP+D+E MW +P V  EW+D GETKGQKVHLSRDPDGQPYLTQTEM+A
Sbjct: 1   MANSFTFWNDCVEPEDLEEMWMDPAVSAEWIDVGETKGQKVHLSRDPDGQPYLTQTEMRA 60

Query: 61  VAEIIVRRHFDSQILPAMLCAIAELASDRQLLATRYDKKTKQTTVGIMQLLPATMEWLIR 120
           V++I VRRHFDS +   M+CAIAEL SDR+ L  RY KKTK+T +GI+Q+   T  WL  
Sbjct: 61  VSDITVRRHFDSILDSEMICAIAELESDRKPLIMRYSKKTKETGLGILQVFEKTAAWLAG 120

Query: 121 DLGYRVYKGEGNPDILYRPFVSVYFGAAYLQWLSNFERQERSEEFVVRAYKGGIEKANHK 180
             GY+ Y  + NPD+L++PF++VYFGAAYL+WL++++  +RSEEFVVRAY GG +KA HK
Sbjct: 121 GQGYQAYNVDDNPDLLHKPFINVYFGAAYLKWLTDYQNNQRSEEFVVRAYNGGTKKATHK 180

Query: 181 STLQHWKRYLSVKESLPSRRFVDDGPSVDNXXXXXXXXXXXXXXXXXXXXXXQKTGGDYV 240
           STL +WKRYL+VKESLPSR+  D GPS                           +  D+ 
Sbjct: 181 STLPYWKRYLAVKESLPSRKHGDAGPS----------------SFRPTNPASPGSNTDFT 224

Query: 241 YWDSRASPEDMQEMWNNSDVAREWIKSGEKRGKVRFSLDKDKRLYLSRVEVKIDLIQAVA 300
           YWDSRASPEDM++MWN S++ +EW KS E+RGKVRFS D +KR YLSR E+K     AVA
Sbjct: 225 YWDSRASPEDMEDMWNQSEICKEWTKSKEERGKVRFSQDGEKRPYLSRGELK-----AVA 279

Query: 301 QTILSKHFSTRGVKPSVLCALAEMVSFRFVNGVGPQIGLMGIDYSTAFWLYMELGYRAYR 360
           + I+SK+FST+G++  ++CA+A+ V  RFVNG+   +G++G+DYSTA WLY ELGYRAYR
Sbjct: 280 EIIVSKYFSTKGIRVPLVCAIADTVCMRFVNGIKKHVGILGVDYSTASWLYSELGYRAYR 339

Query: 361 VDSVDDLTKPFVSMYFGAAYLAYLSEYEGRERTPQFVVQAYLAGPKNVNLQETGPFWLKF 420
           VDS DDLTKPF+SMYFG AYL +LSEYEG +R+ QF+VQAY+ GP +V+L+E+ P WLKF
Sbjct: 340 VDSADDLTKPFISMYFGVAYLVWLSEYEGSQRSNQFIVQAYMKGPDHVDLEESCPLWLKF 399

Query: 421 EEALSNYEDIKKDPGSCTIL 440
           E+ALS YE+ K+D GSC IL
Sbjct: 400 EQALSYYEESKRDSGSCVIL 419