Jatropha Genome Database

JcCA0080571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080571.10 + phase: 0 /partial
         (112 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54250.1 | Symbols:  | mevalonate diphosphate decarboxylase, ...   145   4e-36
AT2G38700.1 | Symbols: MVD1, ATMVD1 | MVD1 (MEVALONATE DIPHOSPHA...   121   1e-28

>AT3G54250.1 | Symbols:  | mevalonate diphosphate decarboxylase,
           putative | chr3:20082468-20084688 REVERSE
          Length = 419

 Score =  145 bits (367), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 85/115 (73%), Gaps = 3/115 (2%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQEIK 60
           VAYTFDAGPNAVLIA+NRK A           PP SDTD+ SYV+GD SILK+AG+    
Sbjct: 305 VAYTFDAGPNAVLIARNRKVAVQLLQGLLYYFPPKSDTDMKSYVVGDNSILKEAGLDGAS 364

Query: 61  DVEALPPPPEIKD---ASRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
            VE L PPPEIKD   +   KG+VSYFICTRPG+GP++L D++ ALL+PETGLPK
Sbjct: 365 GVENLQPPPEIKDNIGSQDQKGEVSYFICTRPGKGPIVLHDQTQALLDPETGLPK 419


>AT2G38700.1 | Symbols: MVD1, ATMVD1 | MVD1 (MEVALONATE DIPHOSPHATE
           DECARBOXYLASE 1); diphosphomevalonate decarboxylase/
           protein homodimerization | chr2:16180918-16183785
           REVERSE
          Length = 412

 Score =  121 bits (303), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 12/116 (10%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQ-EI 59
           +AYTFDAGPNAV+IA+NRK A           PP  DTD+ SYV+GD SI+K+AG++ E+
Sbjct: 305 IAYTFDAGPNAVMIARNRKVAVELLQGLLYCFPPKPDTDMKSYVLGDTSIVKEAGLEGEL 364

Query: 60  KDVEALPPPPEIKD---ASRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
                   P  IKD   +   KG+VSYFIC+RPGRGPV+L D++ ALL+P+TGLPK
Sbjct: 365 --------PQGIKDKIGSQDQKGEVSYFICSRPGRGPVVLQDQTQALLHPQTGLPK 412