Jatropha Genome Database

JcCA0080501.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080501.30 + phase: 0 
         (296 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1 | Symbols:  | acidic endochitinase (CHIB1) | chr5:81...   392   e-109

>AT5G24090.1 | Symbols:  | acidic endochitinase (CHIB1) |
           chr5:8143805-8145153 REVERSE
          Length = 302

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/278 (65%), Positives = 225/278 (80%), Gaps = 2/278 (0%)

Query: 21  SDA--GGIAIYWGQNGNEGTLAETCATGNYDFVNIAFLPTFGNGQTPRIDLSGHCDPYSN 78
           SDA  GGIAIYWGQNGNEG L+ TCATG Y +VN+AFL  FGNGQTP ++L+GHC+P +N
Sbjct: 25  SDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAAN 84

Query: 79  GCTGLSSDIKSCQAKGIKVMLSIGGGAGSYYLASTQDAKQVAAYLWNNFLGGYSSSRPLG 138
            CT   S +K CQ++GIKVMLS+GGG G+Y + S +DAK +A YLWNNFLGG SSSRPLG
Sbjct: 85  TCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLG 144

Query: 139 PAVLDGIDFDIEGGTNQHWDDLSRFLKAYSKKGKEVYLTAAPQCPFPDAWVGNALKTGLF 198
            AVLDGIDF+IE G+ QHWDDL+R L  +S +G+++YLT APQCPFPD  +G+AL T  F
Sbjct: 145 DAVLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFPDRLMGSALNTKRF 204

Query: 199 DYVWVQFYNNPPCQYSSGSITNLEEAWKQWVSSIPANKIFLGLPAAPDAAGSGFIPIEDL 258
           DYVW+QFYNNPPC YSSG+  NL ++W +W +SI A K FLGLPAAP+AAGSG+IP + L
Sbjct: 205 DYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVL 264

Query: 259 TSQILPAIKGSAKYGGVMLWSKYYDDETGYSKAIKSTV 296
           TSQILP +K S KYGGVMLWSK++DD+ GYS +I ++V
Sbjct: 265 TSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSSILASV 302