Jatropha Genome Database

JcCA0080501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080501.10 + phase: 0 /partial
         (85 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54826.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   145   5e-36

>AT3G54826.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           Zinc finger, Zim17-type (InterPro:IPR007853); Has 284
           Blast hits to 284 proteins in 134 species: Archae - 0;
           Bacteria - 0; Metazoa - 100; Fungi - 79; Plants - 58;
           Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
           | chr3:20310354-20311652 FORWARD
          Length = 223

 Score =  145 bits (366), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 75/85 (88%)

Query: 1   MIFTCKVCETRSIKTACRDSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARG 60
           M+FTCKVC+TRS+K A R+SYE GVVV RCGGC+NLHLIAD  GWFGEPGS+EDFLA++G
Sbjct: 138 MVFTCKVCDTRSMKMASRESYENGVVVVRCGGCDNLHLIADRRGWFGEPGSVEDFLASQG 197

Query: 61  EEVKKGSIDTLNLTLEDLAGSNISS 85
           EE KKGS+D+LNLT EDLAG  IS+
Sbjct: 198 EEFKKGSMDSLNLTPEDLAGGKIST 222