Jatropha Genome Database
- JcCA0080281.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0080281.30 - phase: 0
(92 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33355.2 | Symbols: | lipid binding | chr4:16067097-16067450... 77 3e-15
AT4G33355.1 | Symbols: | lipid binding | chr4:16067097-16067568... 77 3e-15
AT2G15050.3 | Symbols: LTP | LTP; lipid binding | chr2:6518888-6... 61 2e-10
AT2G15050.2 | Symbols: LTP | LTP; lipid binding | chr2:6518888-6... 61 2e-10
AT2G15050.1 | Symbols: LTP | LTP; lipid binding | chr2:6518888-6... 60 2e-10
AT3G51590.1 | Symbols: LTP12 | LTP12 (LIPID TRANSFER PROTEIN 12)... 59 4e-10
AT5G59320.1 | Symbols: LTP3 | LTP3 (LIPID TRANSFER PROTEIN 3); l... 54 2e-08
AT5G59310.1 | Symbols: LTP4 | LTP4 (LIPID TRANSFER PROTEIN 4); l... 51 1e-07
AT2G38540.1 | Symbols: LP1, LTP1, ATLTP1 | LP1; calmodulin bindi... 50 2e-07
AT3G51600.1 | Symbols: LTP5 | LTP5 (Lipid transfer protein 5); l... 47 2e-06
AT2G38530.1 | Symbols: LTP2, LP2 | LTP2 (LIPID TRANSFER PROTEIN ... 45 7e-06
>AT4G33355.2 | Symbols: | lipid binding | chr4:16067097-16067450
FORWARD
Length = 117
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MAMPGEAVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVK 60
+A GEA+ C QVN LA C+P+L A PS CC G+ +LKA AP C+K
Sbjct: 22 IAYHGEAIACPQVNMYLAQCLPYLK-AGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLK 80
Query: 61 AAASHYPNINEDSASSFPKKCGVEVNIPISKT 92
+ A+ P IN+D A P KCGV + +P SKT
Sbjct: 81 SVANTIPGINDDFAKQLPAKCGVNIGVPFSKT 112
>AT4G33355.1 | Symbols: | lipid binding | chr4:16067097-16067568
FORWARD
Length = 119
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MAMPGEAVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVK 60
+A GEA+ C QVN LA C+P+L A PS CC G+ +LKA AP C+K
Sbjct: 22 IAYHGEAIACPQVNMYLAQCLPYLK-AGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLK 80
Query: 61 AAASHYPNINEDSASSFPKKCGVEVNIPISKT 92
+ A+ P IN+D A P KCGV + +P SKT
Sbjct: 81 SVANTIPGINDDFAKQLPAKCGVNIGVPFSKT 112
>AT2G15050.3 | Symbols: LTP | LTP; lipid binding |
chr2:6518888-6519888 FORWARD
Length = 122
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 7 AVDCGQVNSALAPCIPFLT-GADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASH 65
A+ CG+VNS L PC +LT G T+P CC G++ L + C+K AA +
Sbjct: 26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARN 85
Query: 66 Y-PNINEDSASSFPKKCGVEV 85
P +N D A+ P++CG+++
Sbjct: 86 VGPGLNADRAAGIPRRCGIKI 106
>AT2G15050.2 | Symbols: LTP | LTP; lipid binding |
chr2:6518888-6519888 FORWARD
Length = 115
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 7 AVDCGQVNSALAPCIPFLT-GADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASH 65
A+ CG+VNS L PC +LT G T+P CC G++ L + C+K AA +
Sbjct: 26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARN 85
Query: 66 Y-PNINEDSASSFPKKCGVEV 85
P +N D A+ P++CG+++
Sbjct: 86 VGPGLNADRAAGIPRRCGIKI 106
>AT2G15050.1 | Symbols: LTP | LTP; lipid binding |
chr2:6518888-6519259 FORWARD
Length = 123
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 7 AVDCGQVNSALAPCIPFLT-GADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASH 65
A+ CG+VNS L PC +LT G T+P CC G++ L + C+K AA +
Sbjct: 26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARN 85
Query: 66 Y-PNINEDSASSFPKKCGVEV 85
P +N D A+ P++CG+++
Sbjct: 86 VGPGLNADRAAGIPRRCGIKI 106
>AT3G51590.1 | Symbols: LTP12 | LTP12 (LIPID TRANSFER PROTEIN 12);
lipid binding | chr3:19135828-19136654 REVERSE
Length = 119
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 MAMPGEA-VDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCV 59
MA P E+ + CG V S LA C+ +LT + PS CC G+K+L LA C+
Sbjct: 18 MASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECL 76
Query: 60 KAAASHYPNINEDSASSFPKKCGVEVNIPIS 90
K A +N D ++ P CGV + PIS
Sbjct: 77 KLAGKEIKGLNTDLVAALPTTCGVSIPYPIS 107
>AT5G59320.1 | Symbols: LTP3 | LTP3 (LIPID TRANSFER PROTEIN 3);
lipid binding | chr5:23929051-23929492 FORWARD
Length = 115
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 AVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASHY 66
A+ CG V +LAPC +L+ P +CC G+K L ++A C+++ A
Sbjct: 24 AISCGTVAGSLAPCATYLSKGGLVP-PSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSI 82
Query: 67 PNINEDSASSFPKKCGVEVNIPIS 90
+N AS P KCGV + PIS
Sbjct: 83 SGLNPSLASGLPGKCGVSIPYPIS 106
>AT5G59310.1 | Symbols: LTP4 | LTP4 (LIPID TRANSFER PROTEIN 4);
lipid binding | chr5:23925296-23925772 REVERSE
Length = 112
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 7 AVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASHY 66
A+ CG V S+L+PC+ +L+ P CC G+K L +A C+++AA
Sbjct: 24 AITCGTVASSLSPCLGYLSKGGVVPP-PCCAGVKKLNGMAQTTPDRQQACRCLQSAAK-- 80
Query: 67 PNINEDSASSFPKKCGVEVNIPISKT 92
+N AS P KCGV + PIS +
Sbjct: 81 -GVNPSLASGLPGKCGVSIPYPISTS 105
>AT2G38540.1 | Symbols: LP1, LTP1, ATLTP1 | LP1; calmodulin binding
| chr2:16130418-16130893 FORWARD
Length = 118
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 7 AVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASHY 66
A+ CG VNS LA CI ++ P ACC G+KNL ++A C++ AA
Sbjct: 26 ALSCGSVNSNLAACIGYVLQGGVIPP-ACCSGVKNLNSIAKTTPDRQQACNCIQGAARAL 84
Query: 67 -PNINEDSASSFPKKCGVEVNIPISKT 92
+N A+ PK CGV + IS +
Sbjct: 85 GSGLNAGRAAGIPKACGVNIPYKISTS 111
>AT3G51600.1 | Symbols: LTP5 | LTP5 (Lipid transfer protein 5);
lipid transporter | chr3:19138661-19139124 REVERSE
Length = 118
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 7 AVDCGQVNSALAPCIPFLTGADTAPSAACCGGIKNLKALAPXXXXXXXXXXCVKAAASHY 66
A+ CG V +L C +LT P CC G++ L +LA C++ AA
Sbjct: 26 AISCGAVTGSLGQCYNYLTRGGFIPR-GCCSGVQRLNSLARTTRDRQQACRCIQGAARAL 84
Query: 67 -PNINEDSASSFPKKCGVEVNIPIS 90
+N A+ P C V ++ PIS
Sbjct: 85 GSRLNAGRAARLPGACRVRISYPIS 109
>AT2G38530.1 | Symbols: LTP2, LP2 | LTP2 (LIPID TRANSFER PROTEIN 2);
lipid binding | chr2:16128481-16128948 FORWARD
Length = 118
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 8 VDCGQVNSALAPCIPFLTGADTAP-SAACCGGIKNLKALAPXXXXXXXXXXCVKAAASHY 66
+ CG VN LA CI +LT AP + CC G+ NLK +A C+++AA
Sbjct: 27 MSCGTVNGNLAGCIAYLT--RGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAV 84
Query: 67 -PNINEDSASSFPKKCGVEVNIP 88
P +N A+ P C +VNIP
Sbjct: 85 GPGLNTARAAGLPSAC--KVNIP 105