Jatropha Genome Database

JcCA0080281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.20 + phase: 0 
         (322 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44850.2 | Symbols:  | unknown protein | chr2:18499770-185008...   396   e-110
AT2G44850.1 | Symbols:  | unknown protein | chr2:18498672-185008...   353   1e-97

>AT2G44850.2 | Symbols:  | unknown protein | chr2:18499770-18500823
           FORWARD
          Length = 319

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/325 (62%), Positives = 249/325 (76%), Gaps = 9/325 (2%)

Query: 1   MDCWKGILKVPVDPTSRSYCRVAVSLCLSPSSKSLTVPSANAIFFSGDRVEGTENPVIER 60
           M+ W G+LK+P+D T+ +Y RVA SLCLS SSK+LTVPSANAIFF GD+V+ T N VIER
Sbjct: 1   MERWSGVLKIPLDATTSNYYRVAASLCLS-SSKTLTVPSANAIFFHGDKVQDTGNHVIER 59

Query: 61  LSDLQKIAEILVSKFGGSVNAWVIEASSFNGPFAVYKDFIPSVNCWGEPKSYSPAGFPAS 120
           L DLQK+AEI+VSKFG SVNAWV+EAS FNGPFA+YKDF+PSVN  G PKSYSP GFPAS
Sbjct: 60  LYDLQKVAEIIVSKFGNSVNAWVVEASVFNGPFAIYKDFVPSVNHMGAPKSYSPVGFPAS 119

Query: 121 TSTISLLSNCIREAKKVISTKEKDPISASASSASFYE-PKTYILGFSKGGIVLNQLVAEL 179
           +S +SLLS+C+ E       KE   +      AS +  PKT +LGFSKGG+V+NQL++E+
Sbjct: 120 SSIVSLLSSCLHEV-----LKEGTDVCLIDQIASVHHCPKTIVLGFSKGGVVMNQLMSEI 174

Query: 180 SVSEVKLNSKEQHMNRKCS--QEDIQIIPRSKESLLNSITEIHYVDVGLNSAGAYITDHN 237
           S  +         M  + +   E IQIIP SKES LNSI+E+HY+DVGLNS+GAYITDHN
Sbjct: 175 SSLDTNFAKTSSAMVEESTSQHEKIQIIPASKESFLNSISEVHYIDVGLNSSGAYITDHN 234

Query: 238 VIERISKRLTQGAPGIRFVLHGTPRQWCDSRRVLIRNEKDKLVHLLQSEARRSGGKLKVC 297
           V++RIS+RL +GA  +R V+HGTPRQWCD  R  IR EKD+LV LL++E   SGGKL+VC
Sbjct: 235 VVQRISQRLARGADSLRIVIHGTPRQWCDELRGWIRKEKDELVRLLKAETENSGGKLQVC 294

Query: 298 EKFYFADRPPDLQMHFEIIQSMDVS 322
           E+FYF+DR  DLQMHFEII +MDVS
Sbjct: 295 ERFYFSDRLADLQMHFEIIDAMDVS 319


>AT2G44850.1 | Symbols:  | unknown protein | chr2:18498672-18500823
           FORWARD
          Length = 400

 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 220/289 (76%), Gaps = 8/289 (2%)

Query: 37  VPSANAIFFSGDRVEGTENPVIERLSDLQKIAEILVSKFGGSVNAWVIEASSFNGPFAVY 96
           VPSANAIFF GD+V+ T N VIERL DLQK+AEI+VSKFG SVNAWV+EAS FNGPFA+Y
Sbjct: 117 VPSANAIFFHGDKVQDTGNHVIERLYDLQKVAEIIVSKFGNSVNAWVVEASVFNGPFAIY 176

Query: 97  KDFIPSVNCWGEPKSYSPAGFPASTSTISLLSNCIREAKKVISTKEKDPISASASSASFY 156
           KDF+PSVN  G PKSYSP GFPAS+S +SLLS+C+ E       KE   +      AS +
Sbjct: 177 KDFVPSVNHMGAPKSYSPVGFPASSSIVSLLSSCLHEV-----LKEGTDVCLIDQIASVH 231

Query: 157 E-PKTYILGFSKGGIVLNQLVAELSVSEVKLNSKEQHMNRKCS--QEDIQIIPRSKESLL 213
             PKT +LGFSKGG+V+NQL++E+S  +         M  + +   E IQIIP SKES L
Sbjct: 232 HCPKTIVLGFSKGGVVMNQLMSEISSLDTNFAKTSSAMVEESTSQHEKIQIIPASKESFL 291

Query: 214 NSITEIHYVDVGLNSAGAYITDHNVIERISKRLTQGAPGIRFVLHGTPRQWCDSRRVLIR 273
           NSI+E+HY+DVGLNS+GAYITDHNV++RIS+RL +GA  +R V+HGTPRQWCD  R  IR
Sbjct: 292 NSISEVHYIDVGLNSSGAYITDHNVVQRISQRLARGADSLRIVIHGTPRQWCDELRGWIR 351

Query: 274 NEKDKLVHLLQSEARRSGGKLKVCEKFYFADRPPDLQMHFEIIQSMDVS 322
            EKD+LV LL++E   SGGKL+VCE+FYF+DR  DLQMHFEII +MDVS
Sbjct: 352 KEKDELVRLLKAETENSGGKLQVCERFYFSDRLADLQMHFEIIDAMDVS 400