Jatropha Genome Database

JcCA0079871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079871.20 - phase: 2 /pseudo/partial
         (372 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41460.1 | Symbols: ARP | ARP; DNA-(apurinic or apyrimidinic ...   396   e-110
AT2G41460.2 | Symbols: ARP | ARP; DNA-(apurinic or apyrimidinic ...   262   3e-70
AT3G60950.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   174   1e-43
AT3G61030.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   142   5e-34
AT3G48425.1 | Symbols:  | endonuclease/exonuclease/phosphatase f...    70   3e-12

>AT2G41460.1 | Symbols: ARP | ARP; DNA-(apurinic or apyrimidinic
           site) lyase | chr2:17285731-17288769 FORWARD
          Length = 536

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/429 (51%), Positives = 268/429 (62%), Gaps = 62/429 (14%)

Query: 2   IGAPAKGRKSDLVSALKFFVSKHL-DGXXXXXXXXXXXXTCTEKLSLQKGATNVSDEKLN 60
           +G P KGRK +L+S L+  +  +L D             T   K+S ++  T   DE  N
Sbjct: 112 LGVPVKGRKQELISTLRLHMDSNLPDQKETSSSTRSDSVTIKRKISNREEPT--EDECTN 169

Query: 61  TVSEDLCFKQSKRRVKQSV-----------AVGTNE---------SVKVDSEMSTIKEKD 100
           + + D+  +  ++RVKQS            A+   +          ++   E S+    +
Sbjct: 170 SEAYDI--EHGEKRVKQSTEKNLKAKVSAKAIAKEQKSLMRTGKQQIQSKEETSSTISSE 227

Query: 101 SVKREEV-----SAEPWTILAHKKPQKGWIPYNPGTMRPPPPAGDTKFVKLMSWNVNGLR 155
            +K EE+      +EPWT+LAHKKPQK W  YNP TMRPPP    TK VK+M+WNVNGLR
Sbjct: 228 LLKTEEIISSPSQSEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLR 287

Query: 156 ALLKSEGFSALELAQRENFD----------EKDVESIKHCLIDGYDSSFWTCSRSKLGYS 205
            LLK E FSAL+LAQRENFD           KDVE IK  LIDGYD SFW+CS SKLGYS
Sbjct: 288 GLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYS 347

Query: 206 GTAIISRIKPISVSYGLGIPDHDSEGRLVTAEFDSFYLISAYVPNSGDGLKRLSYRIGEW 265
           GTAIISRIKP+SV YG G+  HD+EGR+VTAEFDSFYLI+ YVPNSGDGLKRLSYRI EW
Sbjct: 348 GTAIISRIKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEW 407

Query: 266 DLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTKLFVKG 325
           D +LSN++KELEKSKPV+LTGDLNCAH+EIDI+NPAGN+RSAGFT EERQSFG  L  KG
Sbjct: 408 DRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG 467

Query: 326 ICGYFQKTTSKMLXAILTG-----------------VIDMAGAKPIK-----PDVNGSDH 363
               F+K    ++     G                 ++  + A  +      PD+NGSDH
Sbjct: 468 FVDTFRKQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHDSYILPDINGSDH 527

Query: 364 CPIGLILKL 372
           CPIGLILKL
Sbjct: 528 CPIGLILKL 536


>AT2G41460.2 | Symbols: ARP | ARP; DNA-(apurinic or apyrimidinic
           site) lyase | chr2:17285731-17288041 FORWARD
          Length = 403

 Score =  262 bits (669), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 146/293 (49%), Positives = 180/293 (61%), Gaps = 40/293 (13%)

Query: 2   IGAPAKGRKSDLVSALKFFVSKHL-DGXXXXXXXXXXXXTCTEKLSLQKGATNVSDEKLN 60
           +G P KGRK +L+S L+  +  +L D             T   K+S ++  T   DE  N
Sbjct: 112 LGVPVKGRKQELISTLRLHMDSNLPDQKETSSSTRSDSVTIKRKISNREEPTE--DECTN 169

Query: 61  TVSEDLCFKQSKRRVKQSV-----------AVGTNE---------SVKVDSEMSTIKEKD 100
           + + D+  +  ++RVKQS            A+   +          ++   E S+    +
Sbjct: 170 SEAYDI--EHGEKRVKQSTEKNLKAKVSAKAIAKEQKSLMRTGKQQIQSKEETSSTISSE 227

Query: 101 SVKREEV-----SAEPWTILAHKKPQKGWIPYNPGTMRPPPPAGDTKFVKLMSWNVNGLR 155
            +K EE+      +EPWT+LAHKKPQK W  YNP TMRPPP    TK VK+M+WNVNGLR
Sbjct: 228 LLKTEEIISSPSQSEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLR 287

Query: 156 ALLKSEGFSALELAQRENFD----------EKDVESIKHCLIDGYDSSFWTCSRSKLGYS 205
            LLK E FSAL+LAQRENFD           KDVE IK  LIDGYD SFW+CS SKLGYS
Sbjct: 288 GLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYS 347

Query: 206 GTAIISRIKPISVSYGLGIPDHDSEGRLVTAEFDSFYLISAYVPNSGDGLKRL 258
           GTAIISRIKP+SV YG G+  HD+EGR+VTAEFDSFYLI+ YVPNSGDGLKRL
Sbjct: 348 GTAIISRIKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRL 400


>AT3G60950.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: cultured cell; CONTAINS
           InterPro DOMAIN/s: C2 membrane targeting protein
           (InterPro:IPR018029), C2 calcium/lipid-binding region,
           CaLB (InterPro:IPR008973),
           Endonuclease/exonuclease/phosphatase
           (InterPro:IPR005135), C2 calcium-dependent membrane
           targeting (InterPro:IPR000008); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G61030.1); Has 1924 Blast hits to 1845 proteins
           in 524 species: Archae - 48; Bacteria - 681; Metazoa -
           518; Fungi - 110; Plants - 234; Viruses - 0; Other
           Eukaryotes - 333 (source: NCBI BLink). |
           chr3:22524475-22529575 FORWARD
          Length = 599

 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/106 (76%), Positives = 93/106 (87%), Gaps = 2/106 (1%)

Query: 213 IKPISVSYGLGIP--DHDSEGRLVTAEFDSFYLISAYVPNSGDGLKRLSYRIGEWDLSLS 270
           IKP+ V YG G+   DHD EGR+VTAEFDSFYLIS YVPNS DGLK L+YRI +WD +LS
Sbjct: 491 IKPLRVRYGTGLSGSDHDMEGRMVTAEFDSFYLISTYVPNSVDGLKGLTYRIEDWDRTLS 550

Query: 271 NYLKELEKSKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQS 316
           N++K+LEKSKPV+LTGDLNCAH+EIDI+NPAGNRRSAGFT EERQS
Sbjct: 551 NHIKDLEKSKPVVLTGDLNCAHEEIDIFNPAGNRRSAGFTIEERQS 596


>AT3G61030.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           C2 membrane targeting protein (InterPro:IPR018029), C2
           calcium/lipid-binding region, CaLB (InterPro:IPR008973),
           Endonuclease/exonuclease/phosphatase
           (InterPro:IPR005135), C2 calcium-dependent membrane
           targeting (InterPro:IPR000008); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G60950.1); Has 1924 Blast hits to 1845 proteins
           in 524 species: Archae - 48; Bacteria - 681; Metazoa -
           518; Fungi - 110; Plants - 234; Viruses - 0; Other
           Eukaryotes - 333 (source: NCBI BLink). |
           chr3:22585655-22590756 FORWARD
          Length = 583

 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 79/106 (74%), Gaps = 18/106 (16%)

Query: 213 IKPISVSYGLGIP--DHDSEGRLVTAEFDSFYLISAYVPNSGDGLKRLSYRIGEWDLSLS 270
           IKP+ V YG G+   DHD EGR+VTAEFDSFYLIS YVPNS DGLK L            
Sbjct: 491 IKPLRVRYGTGLSGSDHDMEGRMVTAEFDSFYLISTYVPNSVDGLKGL------------ 538

Query: 271 NYLKELEKSKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQS 316
               +LEKSKPV+LTGDLNCAH+EIDI+NPAGNRRSAGFT EERQS
Sbjct: 539 ----DLEKSKPVVLTGDLNCAHEEIDIFNPAGNRRSAGFTIEERQS 580


>AT3G48425.1 | Symbols:  | endonuclease/exonuclease/phosphatase
           family protein | chr3:17931910-17934493 FORWARD
          Length = 364

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 23/148 (15%)

Query: 194 FWTCSRSKLGYSGTAIISR--IKPISVSYGLG--IPDHDSEGRLVTAEFDSFYLISAYVP 249
           +W+ + SK  Y+GTA++ +   KP  V + L      H+ +GR++ AEF++F L++ Y P
Sbjct: 127 WWSLADSK--YAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSP 184

Query: 250 NSGDGLKRLSY-RIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNP-------- 300
           N+G   +  ++ R  +WD  +  +L +    KP+I  GDLN +H+EID+ +P        
Sbjct: 185 NNGWKDEENAFQRRRKWDKRIVEFLNKT-SDKPLIWCGDLNVSHEEIDVSHPEFFATAKL 243

Query: 301 ----AGNRRSA---GFTDEERQSFGTKL 321
                 N+      GFT  ER  FG  +
Sbjct: 244 NGYVPPNKEDCGQPGFTPSERGRFGATI 271