Jatropha Genome Database

JcCA0079711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079711.20 - phase: 2 /partial
         (130 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28830.1 | Symbols:  | calcium-binding EF hand family protein...    63   4e-11

>AT5G28830.1 | Symbols:  | calcium-binding EF hand family protein |
           chr5:10856801-10858394 FORWARD
          Length = 324

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 5/123 (4%)

Query: 5   LHVKICVIVLCKFLQPLNKHLQLLNNEEKVKNVMEKVLQEKHSKKNDQKDTEIIRGFLEE 64
           LH K   IVL   +   ++  ++L +E+ +K ++EK + E+ + K  Q     +R  + +
Sbjct: 202 LHEKPITIVLNVEIFTGSRIRKILADEKTLKCLVEKTILEESNGKESQG---WLRTLIIK 258

Query: 65  NGKELGLPP-SEANEAVMLLYDAVFAEVECGKCIAESEDEFRELVKEILKNFAQQLQANP 123
           NGKELGLPP S  NE V LLY+ + +++   K  A +++EF + +K+ILK F + L+  P
Sbjct: 259 NGKELGLPPLSSENEQVALLYETIISQLN-NKENASTKEEFMDALKDILKKFEELLETTP 317

Query: 124 VYC 126
           V+ 
Sbjct: 318 VFS 320