Jatropha Genome Database

JcCA0079611.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079611.20 + phase: 0 /partial
         (392 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69830.1 | Symbols: ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3...   491   e-139
AT1G76130.1 | Symbols: ATAMY2, AMY2 | AMY2 (ALPHA-AMYLASE-LIKE 2...   411   e-115
AT4G25000.1 | Symbols: ATAMY1, AMY1 | AMY1 (ALPHA-AMYLASE-LIKE);...   336   1e-92

>AT1G69830.1 | Symbols: ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3);
           alpha-amylase | chr1:26288518-26293003 REVERSE
          Length = 887

 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/391 (61%), Positives = 288/391 (73%), Gaps = 9/391 (2%)

Query: 2   QGFNWESWRR-RWYVELAPKAADLYQSGVTAVWFPPPTESVAPQGYMPSDLYNLNSAYGT 60
           QGFNWES +  RWY+EL  KA +L   G T +W PPPTESV+P+GYMP DLYNLNS YGT
Sbjct: 500 QGFNWESNKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNLNSRYGT 559

Query: 61  EEELKYCIEEMHSHDLLALGDVVLNHRCAQKQSPNGVWNIFGGKISWGPEAIVCDDPNFQ 120
            +ELK  +++ H   +  LGD VLNHRCA  ++ NGVWN+FGG+++W   A+V DDP+FQ
Sbjct: 560 IDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLFGGRLNWDDRAVVADDPHFQ 619

Query: 121 GRGNPSSGDIFHAAPNIDHSQDFVRKDIKVWLNWLRSHICFDGWRLDFVRGFSGTYFKEY 180
           GRGN SSGD FHAAPNIDHSQDFVRKDIK WL W+   + +DGWRLDFVRGF G Y K+Y
Sbjct: 620 GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFVRGFWGGYVKDY 679

Query: 181 IEASDPAFAIGEYWDSLAYENGSLCYNQDAHRQRIVNWINATGGTSSAFDVTTKGILHSA 240
           ++AS P FA+GEYWDSL+Y  G + YNQDAHRQRIV+WINAT G + AFDVTTKGILH+A
Sbjct: 680 MDASKPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATSGAAGAFDVTTKGILHTA 739

Query: 241 LHN-QYWRLIDPQGKPTGVMGWWPSRAVTFLENHDTGSTQGHWPFPRDKLMQGYAYILTH 299
           L   +YWRL DP+GKP GV+GWWPSRAVTF+ENHDTGSTQGHW FP  K MQGYAYILTH
Sbjct: 740 LQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTH 799

Query: 300 PGTPTIFYDH-FYDFGIRDVITELVEARKRADIHCRSSVKIYHANNEGYVAQIGDTLVMK 358
           PGTP +F+DH F D+     I  L+  R R  +HCRS V I  +  + Y A I + + MK
Sbjct: 800 PGTPAVFFDHIFSDY--HSEIAALLSLRNRQKLHCRSEVNIDKSERDVYAAIIDEKVAMK 857

Query: 359 LGHFDWNPSKEINLDGSWQKFVDKGSDYQVW 389
           +G   + P    N   +W   V+ G DY+VW
Sbjct: 858 IGPGHYEPP---NGSQNWSVAVE-GRDYKVW 884


>AT1G76130.1 | Symbols: ATAMY2, AMY2 | AMY2 (ALPHA-AMYLASE-LIKE 2);
           alpha-amylase/ calcium ion binding / catalytic/ cation
           binding | chr1:28561647-28563914 FORWARD
          Length = 413

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/392 (51%), Positives = 260/392 (66%), Gaps = 12/392 (3%)

Query: 1   FQGFNWESWRRRWYVELAPKAADLYQSGVTAVWFPPPTESVAPQGYMPSDLYNLNSAYGT 60
            Q +NWES +  W+  L  K  D+ +SG T+ W PPP++S+AP+GY+P DLY+LNSAYG+
Sbjct: 29  LQAYNWESHKYDWWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYSLNSAYGS 88

Query: 61  EEELKYCIEEMHSHDLLALGDVVLNHRCAQKQSPNGVWNIFGG-KISWGPEAIVCDDPNF 119
           E  LK  + +M  + + A+ D+V+NHR    +   G++N + G  + W   A+       
Sbjct: 89  EHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGHGGMYNRYDGISLPWDEHAVTS---CT 145

Query: 120 QGRGNPSSGDIFHAAPNIDHSQDFVRKDIKVWLNWLRSHICFDGWRLDFVRGFSGTYFKE 179
            G GN S+GD F+  PN+DH+Q FVRKDI  WL WLR+ + F  +R DF RG+S  Y KE
Sbjct: 146 GGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRWLRNTVGFQDFRFDFARGYSANYVKE 205

Query: 180 YIEASDPAFAIGEYWDSLAYENGSLCYNQDAHRQRIVNWINATGGTSSAFDVTTKGILHS 239
           YI A+ P F++GE WDS  Y    L YNQD+HRQRI++WI+ATG  S+AFD TTKGIL  
Sbjct: 206 YIGAAKPLFSVGECWDSCNYNGHGLDYNQDSHRQRIISWIDATGQISAAFDFTTKGILQE 265

Query: 240 ALHNQYWRLIDPQGKPTGVMGWWPSRAVTFLENHDTGSTQGHWPFPRDKLMQGYAYILTH 299
           A+  QYWRL D QGKP GVMGWWPSRAVTFL+NHDTGSTQ HWPFP   +M+GYAYILTH
Sbjct: 266 AVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSHHVMEGYAYILTH 325

Query: 300 PGTPTIFYDHFYDFG--IRDVITELVEARKRADIHCRSSVKIYHANNEGYVAQIGDTLVM 357
           PG P +FYDHFYD+G  I D I +L++ R+R DIH RS+V++  A +  Y A +G+ + M
Sbjct: 326 PGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIHSRSTVRVLKAESNLYAAIVGEKICM 385

Query: 358 KLGHFDWNPSKEINLDGSWQKFVDKGSDYQVW 389
           KLG   W PS      G        G  Y VW
Sbjct: 386 KLGDGSWCPS------GRDWTLATSGHRYAVW 411


>AT4G25000.1 | Symbols: ATAMY1, AMY1 | AMY1 (ALPHA-AMYLASE-LIKE);
           alpha-amylase | chr4:12852109-12853825 REVERSE
          Length = 423

 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/403 (42%), Positives = 252/403 (62%), Gaps = 19/403 (4%)

Query: 1   FQGFNWESWRRR--WYVELAPKAADLYQSGVTAVWFPPPTESVAPQGYMPSDLYNLNSA- 57
           FQ FNWESW++   +Y  L     D+  +G+T +W PPP++SVAP+GY+P  LY+LNS+ 
Sbjct: 29  FQSFNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYDLNSSK 88

Query: 58  YGTEEELKYCIEEMHSHDLLALGDVVLNHRCAQKQSPNGVWNIFGG-----KISWGPEAI 112
           YG+E ELK  I+ ++   + AL D+V+NHR A+++     +  F G     ++ W P  +
Sbjct: 89  YGSEAELKSLIKALNQKGIKALADIVINHRTAERKDDKCGYCYFEGGTSDDRLDWDPSFV 148

Query: 113 VCDDPNFQGRGNPSSGDIFHAAPNIDHSQDFVRKDIKVWLNWLRSHICFDGWRLDFVRGF 172
             +DP F G GN  +G  F  AP+IDH    V+K++  W+NWL++ I F GWR D+VRG+
Sbjct: 149 CRNDPKFPGTGNLDTGGDFDGAPDIDHLNPRVQKELSEWMNWLKTEIGFHGWRFDYVRGY 208

Query: 173 SGTYFKEYIEASDPAFAIGEYWDSLAY-ENGSLCYNQDAHRQRIVNWI-NATGGTSSAFD 230
           + +  K Y++ + P FA+GE WD + Y  +G L Y+Q+ HR  +  WI  A GG  +AFD
Sbjct: 209 ASSITKLYVQNTSPDFAVGEKWDDMKYGGDGKLDYDQNEHRSGLKQWIEEAGGGVLTAFD 268

Query: 231 VTTKGILHSALHNQYWRLIDPQGKPTGVMGWWPSRAVTFLENHDTGSTQGHWPFPRDKLM 290
            TTKGIL SA+  + WRL D QGKP G++G  P  AVTF++NHDT  T   W FP DK++
Sbjct: 269 FTTKGILQSAVKGELWRLKDSQGKPPGMIGIMPGNAVTFIDNHDTFRT---WVFPSDKVL 325

Query: 291 QGYAYILTHPGTPTIFYDHFYDFGIRDVITELVEARKRADIHCRSSVKIYHANNEGYVAQ 350
            GY YILTHPGTP IFY+H+ ++G+++ I++LV  R +  I   SSV I  A  + Y+A 
Sbjct: 326 LGYVYILTHPGTPCIFYNHYIEWGLKESISKLVAIRNKNGIGSTSSVTIKAAEADLYLAM 385

Query: 351 IGDTLVMKLGHFDWNPSKEI-NLDGSWQKFVDKGSDYQVWLRQ 392
           I D ++MK+G     P +++  L  S       G D+ VW ++
Sbjct: 386 IDDKVIMKIG-----PKQDVGTLVPSNFALAYSGLDFAVWEKK 423