Jatropha Genome Database

JcCA0078491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078491.10 - phase: 0 /partial
         (104 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21350.3 | Symbols:  | antioxidant/ oxidoreductase | chr1:747...    83   3e-17
AT1G21350.2 | Symbols:  | antioxidant/ oxidoreductase | chr1:747...    83   3e-17

>AT1G21350.3 | Symbols:  | antioxidant/ oxidoreductase |
           chr1:7477376-7479012 REVERSE
          Length = 252

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 6/105 (5%)

Query: 1   MAATVQSVASTAGGARSLPFQRTLAITSTKFLSRWVSSKMDFNFLQLGCRKNTTLPA-RK 59
           MAA+      T G +  LP +  LA++S +  S +  S++DF+ L    R+    P+ R+
Sbjct: 1   MAASTVVTTVTHGASSILPSRTALAVSSRR-FSSFSPSRLDFSNL----RRRVNAPSPRR 55

Query: 60  LLIRAARTESQGVFLGFRPPNFELPEPLTGKTWKLDDFESYPALL 104
           L++RAARTES GV LG R PNFELPEPLTG  WKL+DFE YP+LL
Sbjct: 56  LVVRAARTESAGVKLGARAPNFELPEPLTGNLWKLEDFELYPSLL 100


>AT1G21350.2 | Symbols:  | antioxidant/ oxidoreductase |
           chr1:7477376-7479012 REVERSE
          Length = 225

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 6/105 (5%)

Query: 1   MAATVQSVASTAGGARSLPFQRTLAITSTKFLSRWVSSKMDFNFLQLGCRKNTTLPA-RK 59
           MAA+      T G +  LP +  LA++S +F S    S++DF+ L    R+    P+ R+
Sbjct: 1   MAASTVVTTVTHGASSILPSRTALAVSSRRFSSF-SPSRLDFSNL----RRRVNAPSPRR 55

Query: 60  LLIRAARTESQGVFLGFRPPNFELPEPLTGKTWKLDDFESYPALL 104
           L++RAARTES GV LG R PNFELPEPLTG  WKL+DFE YP+LL
Sbjct: 56  LVVRAARTESAGVKLGARAPNFELPEPLTGNLWKLEDFELYPSLL 100