Jatropha Genome Database

JcCA0078121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078121.10 + phase: 0 /partial
         (164 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13580.2 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE H...   263   5e-71
AT1G13580.1 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE H...   263   5e-71
AT3G25540.1 | Symbols: LAG1 | LAG1 | chr3:9274752-9276261 FORWARD     241   1e-64
AT1G26200.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   186   5e-48
AT3G19260.1 | Symbols: LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMO...   105   1e-23

>AT1G13580.2 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE
           HOMOLOG 3) | chr1:4645006-4646765 REVERSE
          Length = 308

 Score =  263 bits (671), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 142/164 (86%)

Query: 1   MGFIDHVKSIEWENESYPAYEDYIVLPLFALFFPSVRFFLDRFVFEKVAKRLIFGKGYRT 60
           MG ++ VKSI WE+ES P Y+D+ VLPLFA+FFPS+RF LDRFVFEK+AK LI+GK  + 
Sbjct: 1   MGLLESVKSINWEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEKLAKYLIYGKHRQD 60

Query: 61  LDVETDERKKKIRKFKESAWKCVYFLSGEILALTVTYNEPWFTNTKYFWVGPGNQVWPDQ 120
           +  +T ERKKKIRKFKESAWKCVY+LS EILAL+VTYNEPWF NTKYFWVGPG+Q WPDQ
Sbjct: 61  MGDDTTERKKKIRKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQ 120

Query: 121 KMKLKLKGVYMYAAGFYTYSIFALIFWETRRSDFGVTGSHHVAT 164
           + KLKLK +YM+ AGFYTYSIFAL+FWETRRSDFGV+  HH+AT
Sbjct: 121 QTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIAT 164


>AT1G13580.1 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE
           HOMOLOG 3) | chr1:4645380-4646765 REVERSE
          Length = 239

 Score =  263 bits (671), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 142/164 (86%)

Query: 1   MGFIDHVKSIEWENESYPAYEDYIVLPLFALFFPSVRFFLDRFVFEKVAKRLIFGKGYRT 60
           MG ++ VKSI WE+ES P Y+D+ VLPLFA+FFPS+RF LDRFVFEK+AK LI+GK  + 
Sbjct: 1   MGLLESVKSINWEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEKLAKYLIYGKHRQD 60

Query: 61  LDVETDERKKKIRKFKESAWKCVYFLSGEILALTVTYNEPWFTNTKYFWVGPGNQVWPDQ 120
           +  +T ERKKKIRKFKESAWKCVY+LS EILAL+VTYNEPWF NTKYFWVGPG+Q WPDQ
Sbjct: 61  MGDDTTERKKKIRKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQ 120

Query: 121 KMKLKLKGVYMYAAGFYTYSIFALIFWETRRSDFGVTGSHHVAT 164
           + KLKLK +YM+ AGFYTYSIFAL+FWETRRSDFGV+  HH+AT
Sbjct: 121 QTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIAT 164


>AT3G25540.1 | Symbols: LAG1 | LAG1 | chr3:9274752-9276261 FORWARD
          Length = 310

 Score =  241 bits (616), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 136/167 (81%), Gaps = 3/167 (1%)

Query: 1   MGFIDHVKSIEWENESYPAYEDYIVLPLFALFFPSVRFFLDRFVFEKVAKRLIFGKGYRT 60
           MG  + VKSI+WE ES+P Y+D   LPLFA+FFP++RF LDRFVFEK+A  +I+G+    
Sbjct: 1   MGLFESVKSIDWEQESFPTYQDLGFLPLFAVFFPTIRFLLDRFVFEKLASLVIYGRMSTN 60

Query: 61  LDVETDERKK---KIRKFKESAWKCVYFLSGEILALTVTYNEPWFTNTKYFWVGPGNQVW 117
                 +RKK   K+RKFKESAWKC+Y+LS E+LAL+VTYNEPWF+NT YFW+GPG+Q+W
Sbjct: 61  KSDNIKDRKKNSPKVRKFKESAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIW 120

Query: 118 PDQKMKLKLKGVYMYAAGFYTYSIFALIFWETRRSDFGVTGSHHVAT 164
           PDQ MK+KLK +YM+AAGFYTYSIFAL+FWETRRSDFGV+  HH+ T
Sbjct: 121 PDQPMKMKLKFLYMFAAGFYTYSIFALVFWETRRSDFGVSMGHHITT 167


>AT1G26200.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           integral to membrane; CONTAINS InterPro DOMAIN/s:
           Longevity assurance, LAG1/LAC1 (InterPro:IPR016439),
           TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST
           Arabidopsis thaliana protein match is: LAG13 (LAG1
           LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2). |
           chr1:9063471-9064914 REVERSE
          Length = 312

 Score =  186 bits (473), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 3/154 (1%)

Query: 11  EWENESYPAYEDYIVLPLFALFFPSVRFFLDRFVFEKVAKRLIFGKGYRTLDVETDERKK 70
           +W+ ESYP   D++VL  FA FF  +R  LDR +FE+VA+RL+  KG   L  +++ER+K
Sbjct: 10  DWDQESYPDSSDFLVLIFFAPFFLFLRLILDRCIFERVARRLVVPKG---LCADSNERRK 66

Query: 71  KIRKFKESAWKCVYFLSGEILALTVTYNEPWFTNTKYFWVGPGNQVWPDQKMKLKLKGVY 130
           K+ KFKESAWKC+   S E  AL VTY EPWF +T+ FW+GPG+QVWPDQK+KLK+KG+Y
Sbjct: 67  KVVKFKESAWKCLCSFSVEAFALYVTYKEPWFKDTRSFWLGPGDQVWPDQKIKLKMKGMY 126

Query: 131 MYAAGFYTYSIFALIFWETRRSDFGVTGSHHVAT 164
           M+  G   Y+ FAL FWETRRSDF V   HH+ T
Sbjct: 127 MFVGGLNVYAFFALFFWETRRSDFKVMLVHHIVT 160


>AT3G19260.1 | Symbols: LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE
           HOMOLOGUE 2) | chr3:6669448-6671257 REVERSE
          Length = 296

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 6/136 (4%)

Query: 29  FALFFPSVRFFLDRFVFEKVAKRLIFGKGYRTLDVETDERKKKIRKFKESAWKCVYFLSG 88
           FA  F  +R  LDR+VF+++A  L+   G   + +     + KI K KES WK +Y+ + 
Sbjct: 28  FAFGFFFLRLVLDRYVFQRIALWLL-STGSAPIKLNDAATRAKIVKCKESLWKLLYYAAC 86

Query: 89  EILALTVTYNEPWFTNTKYFWVGPGNQVWPDQKMKLKLKGVYMYAAGFYTYSIFALIFWE 148
           +   L V Y+EPW  + K ++ G     WP+Q++KL +K  YM   GFY Y + AL+ WE
Sbjct: 87  DFFVLQVIYHEPWARDIKLYFHG-----WPNQELKLSIKLYYMCQCGFYVYGVAALLAWE 141

Query: 149 TRRSDFGVTGSHHVAT 164
           TRR DF V  SHHV T
Sbjct: 142 TRRKDFAVMMSHHVIT 157