Jatropha Genome Database
- JcCA0077561.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0077561.10 - phase: 0
(455 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR... 184 1e-46
AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR... 158 6e-39
AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR ... 152 6e-37
AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR... 135 8e-32
AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR... 132 4e-31
AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR... 122 5e-28
AT5G53660.1 | Symbols: AtGRF7 | AtGRF7 (GROWTH-REGULATING FACTOR... 111 8e-25
AT4G24150.1 | Symbols: AtGRF8 | AtGRF8 (GROWTH-REGULATING FACTOR... 100 2e-21
AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR... 78 1e-14
>AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR
5); transcription activator | chr3:4608526-4610160
FORWARD
Length = 397
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%), Gaps = 3/112 (2%)
Query: 8 PFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPSHIGWSCF 67
PFT +QW+ELEHQALI+KYMVSG+P+P +L+F+I+RS LD+ L S+L P Q +GW C+
Sbjct: 16 PFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRS-LDTSLVSRLLPHQS--LGWGCY 72
Query: 68 QMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
QMG GRK DPEPGRCRRTDGKKWRCS+EAYPDSKYCE+HMHRG+NR+RK ++
Sbjct: 73 QMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
>AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR
6); transcription activator | chr2:2426340-2427255
FORWARD
Length = 244
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 90/126 (71%), Gaps = 6/126 (4%)
Query: 4 TAKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLF------PR 57
+ PFT SQW+ELE+QAL+FKY+ + +P+P LLF IKR L S SS P
Sbjct: 2 ATRIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPT 61
Query: 58 QPSHIGWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKP 117
H GW+ ++MG+GRKID EPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS
Sbjct: 62 LSPHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSR 121
Query: 118 VEVPTQ 123
PTQ
Sbjct: 122 KPPPTQ 127
>AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR 2);
transcription activator | chr4:17725533-17727609 REVERSE
Length = 535
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 100/148 (67%), Gaps = 13/148 (8%)
Query: 5 AKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPSHIGW 64
K PFT +QW ELE QALI+KY+ + +P+PS LL +IK+S P S P PS GW
Sbjct: 161 VKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFY--PYGS--LP--PSSFGW 214
Query: 65 SCFQMGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVPT- 122
F +G G +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVEV +
Sbjct: 215 GTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQSG 274
Query: 123 ---QTVTANPSITT--QTISSINKNHSS 145
A+ ++TT Q + + N N S+
Sbjct: 275 QNQTAAAASKAVTTPQQPVVAGNTNRSN 302
>AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR
3); transcription activator | chr2:15270300-15272617
REVERSE
Length = 398
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 85/121 (70%), Gaps = 5/121 (4%)
Query: 9 FTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQP-SHIGWSCF 67
F+ +QWQELE QALI++YM++G +P +LL IK+S L LS F P H+
Sbjct: 77 FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLH--LSPSYFLHHPLQHLPHYQP 134
Query: 68 QMGLGRK-IDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVPTQTVT 126
LGR +DPEPGRCRRTDGKKWRCS++ + KYCERHMHRG+NRSRKPVE PT TV
Sbjct: 135 AWYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVETPT-TVN 193
Query: 127 A 127
A
Sbjct: 194 A 194
>AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR
1); transcription activator | chr2:9728841-9731141
FORWARD
Length = 530
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 82/119 (68%), Gaps = 13/119 (10%)
Query: 5 AKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQ---PSH 61
K PF+ +QW ELE QALI+KY+ + +P+PS LL ++K FP P+
Sbjct: 130 VKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLK---------KSFFPYGSLPPNS 180
Query: 62 IGWSCFQMGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
GW F +G G +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVE
Sbjct: 181 FGWGSFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 239
>AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR
4); transcription activator | chr3:19616177-19618268
REVERSE
Length = 380
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 78/119 (65%), Gaps = 15/119 (12%)
Query: 9 FTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDS--------PLSSKLFPRQPS 60
F+ +QWQELE QALI++YM++G +P +LL IK+S L PL QPS
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142
Query: 61 HIGWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
+ G G +DPEPGRC+RTDGKKWRCS++ KYC+RH+HRG+NRSRKPVE
Sbjct: 143 ------WYWGRG-AMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194
>AT5G53660.1 | Symbols: AtGRF7 | AtGRF7 (GROWTH-REGULATING FACTOR
7); transcription activator | chr5:21794636-21795929
FORWARD
Length = 365
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 20/115 (17%)
Query: 7 FPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCLDSPLSSKLFPRQPSHIGWSC 66
+PFT +Q +ELE QA+I+KYM++ IP+P DLL + S SP ++K
Sbjct: 58 YPFTNAQLKELERQAMIYKYMIASIPVPFDLLVSSPSSA--SPCNNKNIAG--------- 106
Query: 67 FQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVP 121
D EPGRCRRTDGKKWRC+KE + KYCE+H+HRG+ RSRK VE P
Sbjct: 107 ---------DLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVEPP 152
>AT4G24150.1 | Symbols: AtGRF8 | AtGRF8 (GROWTH-REGULATING FACTOR
8); transcription activator | chr4:12535972-12539387
FORWARD
Length = 493
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 77/151 (50%), Gaps = 28/151 (18%)
Query: 1 MSETAKFPFTASQWQELEHQALIFKYMVSGIPIPSDLL---------------------- 38
M+E A F+ +QW ELE Q I+KYM++ +P+P +LL
Sbjct: 142 MNEDAGAAFSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGM 201
Query: 39 FTIKRSCLDSPLSSKLFPRQPSHIGWSCFQMGLG-----RKIDPEPGRCRRTDGKKWRCS 93
F+I + PLS + G S Q+G+ D EP RC+RTDGKKWRCS
Sbjct: 202 FSIYADYKNLPLSMWMTVTVAVATGGS-LQLGIASSASNNTADLEPWRCKRTDGKKWRCS 260
Query: 94 KEAYPDSKYCERHMHRGKNRSRKPVEVPTQT 124
+ PD KYCERH H+ + RSRK VE Q+
Sbjct: 261 RNVIPDQKYCERHTHKSRPRSRKHVESSHQS 291
>AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR
9); transcription activator | chr2:18745583-18747403
FORWARD
Length = 429
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 18/119 (15%)
Query: 6 KFPFT-ASQWQELEHQALIFKYMVSGIPIPSDLLFTI-------KRSCLDSPLSSKLFPR 57
K+P+ A+Q E QAL+++Y+ +G+ +P L+ I S + SS L +
Sbjct: 19 KWPWMKAAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNK 78
Query: 58 QPSHIGWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRK 116
+HI ++ EP RCRRTDGKKWRCS KYCERHMHRG+ RSRK
Sbjct: 79 GVTHID----------TLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 65 SCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
CF++ G + D EPGRCRRTDGKKWRCSK+ KYC++HMHRG + + PV+
Sbjct: 295 GCFRL-QGVETDNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRGMKK-KHPVD 347