Jatropha Genome Database

JcCA0077471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.20 + phase: 0 
         (113 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24990.1 | Symbols: ATGP4 | ATGP4 | chr4:12849973-12851249 RE...   181   6e-47
AT3G26980.1 | Symbols: MUB4 | MUB4 (MEMBRANE-ANCHORED UBIQUITIN-...   139   3e-34
AT1G22050.1 | Symbols: MUB6 | MUB6 (MEMBRANE-ANCHORED UBIQUITIN-...   113   3e-26
AT1G77870.1 | Symbols: MUB5 | MUB5 (MEMBRANE-ANCHORED UBIQUITIN-...   112   6e-26
AT5G15460.2 | Symbols: MUB2 | MUB2 (MEMBRANE-ANCHORED UBIQUITIN-...   103   2e-23
AT5G15460.1 | Symbols: MUB2 | MUB2 (MEMBRANE-ANCHORED UBIQUITIN-...   103   2e-23
AT3G01050.1 | Symbols: MUB1 | MUB1 (MEMBRANE-ANCHORED UBIQUITIN-...    97   2e-21

>AT4G24990.1 | Symbols: ATGP4 | ATGP4 | chr4:12849973-12851249
           REVERSE
          Length = 118

 Score =  181 bits (460), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 83/100 (83%), Positives = 95/100 (95%)

Query: 1   MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
           MPEE+ +D+KFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKTV PK +NEVKLI+S
Sbjct: 1   MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query: 61  GKILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKT 100
           GKIL+NNKT+GQC+TPFG+ AGGVI+MHVVVQPSLAKSKT
Sbjct: 61  GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKT 100


>AT3G26980.1 | Symbols: MUB4 | MUB4 (MEMBRANE-ANCHORED
          UBIQUITIN-FOLD PROTEIN 4 PRECURSOR) |
          chr3:9946467-9947444 REVERSE
          Length = 120

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 80/99 (80%)

Query: 1  MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
          MPEEDLV+LKFRLYDGSD+GPF+YS  +TV MLK+RIVS+WPK K + PK+ +++KLIN+
Sbjct: 1  MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60

Query: 61 GKILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSK 99
          GKIL+N KT+ QC+ PF +    VI MHVVVQ S  K++
Sbjct: 61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKAR 99


>AT1G22050.1 | Symbols: MUB6 | MUB6 (MEMBRANE-ANCHORED
          UBIQUITIN-FOLD PROTEIN 6 PRECURSOR) |
          chr1:7771897-7772843 FORWARD
          Length = 119

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 3  EEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGK 62
          EED ++LKFRL DG+DIGP +Y+ + TV  LK++++S WPK K  TPK VN++KLIN+GK
Sbjct: 4  EEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGK 63

Query: 63 ILDNNKTLGQCRTPFGEAAGGVIIMHVVVQ-PSLAK 97
          IL+NN+TL + R P  E  G +I MH+V++ P+L K
Sbjct: 64 ILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDK 99


>AT1G77870.1 | Symbols: MUB5 | MUB5 (MEMBRANE-ANCHORED
           UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) |
           chr1:29285177-29285714 FORWARD
          Length = 120

 Score =  112 bits (279), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 72/101 (71%), Gaps = 2/101 (1%)

Query: 1   MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
           M +EDL++LKFRL DG+DIGP +YS   TV  LK++I++ WPK K   PK +NEVKLIN 
Sbjct: 1   MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60

Query: 61  GKILDNNKTLGQCRT--PFGEAAGGVIIMHVVVQPSLAKSK 99
           GKIL+NNKTL + R+    GE  G V  MHVV++P L + K
Sbjct: 61  GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKK 101


>AT5G15460.2 | Symbols: MUB2 | MUB2 (MEMBRANE-ANCHORED
          UBIQUITIN-FOLD PROTEIN 2) | chr5:5018947-5020105
          REVERSE
          Length = 124

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 66/89 (74%)

Query: 4  EDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKI 63
          +D +++KFRL DGSDIGP  +  A+TV  LK+ +V+ WP+ K   PK V +VKLI++G+I
Sbjct: 5  KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64

Query: 64 LDNNKTLGQCRTPFGEAAGGVIIMHVVVQ 92
          L+NNKT+G CR+P G  +G V  MHV++Q
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQ 93


>AT5G15460.1 | Symbols: MUB2 | MUB2 (MEMBRANE-ANCHORED
          UBIQUITIN-FOLD PROTEIN 2) | chr5:5018947-5020105
          REVERSE
          Length = 124

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 66/89 (74%)

Query: 4  EDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKI 63
          +D +++KFRL DGSDIGP  +  A+TV  LK+ +V+ WP+ K   PK V +VKLI++G+I
Sbjct: 5  KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64

Query: 64 LDNNKTLGQCRTPFGEAAGGVIIMHVVVQ 92
          L+NNKT+G CR+P G  +G V  MHV++Q
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQ 93


>AT3G01050.1 | Symbols: MUB1 | MUB1 (MEMBRANE-ANCHORED
          UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) | chr3:13854-14675
          FORWARD
          Length = 117

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 62/86 (72%)

Query: 7  VDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKILDN 66
          +++KFRL DGSDIGP  +  A+TV  LK+ ++S+WP+ K   PK V EVKLI++GK+L+N
Sbjct: 8  LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 67 NKTLGQCRTPFGEAAGGVIIMHVVVQ 92
          +KT+   R+P    AG V  MHV++Q
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQ 93