Jatropha Genome Database

JcCA0077471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.10 - phase: 0 
         (88 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51140.1 | Symbols:  | pseudouridine synthase family protein ...    88   9e-19

>AT5G51140.1 | Symbols:  | pseudouridine synthase family protein |
          chr5:20784277-20786793 REVERSE
          Length = 395

 Score = 88.2 bits (217), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 57/94 (60%), Gaps = 18/94 (19%)

Query: 1  MKRKREEENRND-----MEIVWQTPANPPEKQ-------------DYIIRDGRRHVRPYH 42
          MKRK++E++ +D     +  V  T +N                  DYI   GRRHVRPY+
Sbjct: 1  MKRKQQEDDNDDGVEKAVSPVLATTSNTMSTDLLLQSSSKLSQKQDYIFHGGRRHVRPYY 60

Query: 43 FEFISHVKNRWAGKTIVDLFAEEFKGRPYEYYVS 76
          FEFISHV  RW GKTIVDLFA+EFKGRP +YYV 
Sbjct: 61 FEFISHVNKRWTGKTIVDLFADEFKGRPRDYYVG 94