Jatropha Genome Database

JcCA0077401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077401.10 + phase: 0 
         (114 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26060.1 | Symbols:  | unknown protein | chr4:13214972-132159...   145   3e-36
AT5G57060.1 | Symbols:  | unknown protein | chr5:23090666-230917...   132   3e-32
AT5G57060.2 | Symbols:  | unknown protein | chr5:23091072-230917...   120   1e-28
AT1G54217.2 | Symbols:  | Expressed protein | chr1:20244346-2024...    96   7e-21
AT1G54217.3 | Symbols:  | Expressed protein | chr1:20244346-2024...    94   2e-20
AT1G54217.1 | Symbols:  | Expressed protein | chr1:20244346-2024...    94   2e-20

>AT4G26060.1 | Symbols:  | unknown protein | chr4:13214972-13215955
           REVERSE
          Length = 133

 Score =  145 bits (367), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 80/97 (82%), Gaps = 4/97 (4%)

Query: 1   MVKSASDKHIDLLRPSARYYSASKGQALDAADREKGKYTLLRDPEEFQVGMYDKPLPCFG 60
           +VKS +DKH  L+RP A+YYSA K    DA    KG+YTL++D +E + G+YDKPLPCFG
Sbjct: 15  LVKSVADKHAGLVRPVAKYYSAVK----DAMVCGKGRYTLVKDVDEVENGVYDKPLPCFG 70

Query: 61  CGVGWFSFLLGFVFPLMWYYATILYFGNYYRKDPRER 97
           CG+GWFSFLLGFVFP +WYYAT+LYFGNYYRKDPRER
Sbjct: 71  CGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRER 107


>AT5G57060.1 | Symbols:  | unknown protein | chr5:23090666-23091796
           FORWARD
          Length = 137

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 76/97 (78%), Gaps = 4/97 (4%)

Query: 1   MVKSASDKHIDLLRPSARYYSASKGQALDAADREKGKYTLLRDPEEFQVGMYDKPLPCFG 60
           +VK  +D+H  L++ ++R+YSA K    DA  R K +YTL++D ++ + G YDKPLPCFG
Sbjct: 16  LVKFIADRHAKLMKQASRHYSAIK----DAMARGKKRYTLVKDVDDMETGAYDKPLPCFG 71

Query: 61  CGVGWFSFLLGFVFPLMWYYATILYFGNYYRKDPRER 97
           CG+GWFSFLLGF+FP +WYYA  LYFGNYYRKDPRER
Sbjct: 72  CGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRER 108


>AT5G57060.2 | Symbols:  | unknown protein |
          chr5:23091072-23091796 FORWARD
          Length = 110

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 4/85 (4%)

Query: 13 LRPSARYYSASKGQALDAADREKGKYTLLRDPEEFQVGMYDKPLPCFGCGVGWFSFLLGF 72
          ++ ++R+YSA K    DA  R K +YTL++D ++ + G YDKPLPCFGCG+GWFSFLLGF
Sbjct: 1  MKQASRHYSAIK----DAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGF 56

Query: 73 VFPLMWYYATILYFGNYYRKDPRER 97
          +FP +WYYA  LYFGNYYRKDPRER
Sbjct: 57 MFPFLWYYAAFLYFGNYYRKDPRER 81


>AT1G54217.2 | Symbols:  | Expressed protein |
          chr1:20244346-20245005 REVERSE
          Length = 103

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 26 QALDAADREKGKYTLLRD-PEEFQVGMYDKPLPCFGCGVGWFSFLLGFVFPLMWYYATIL 84
           + D  +++KGKY L+RD  E+ ++G + KPLPCFG G+GWFSFLLGFVFP  WY AT L
Sbjct: 2  NSTDLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFL 61

Query: 85 YFGNYYRKDPRER 97
          Y  +YY +DPRER
Sbjct: 62 YLISYYHRDPRER 74


>AT1G54217.3 | Symbols:  | Expressed protein |
          chr1:20244346-20245005 REVERSE
          Length = 102

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 29 DAADREKGKYTLLRD-PEEFQVGMYDKPLPCFGCGVGWFSFLLGFVFPLMWYYATILYFG 87
          +  +++KGKY L+RD  E+ ++G + KPLPCFG G+GWFSFLLGFVFP  WY AT LY  
Sbjct: 4  NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63

Query: 88 NYYRKDPRER 97
          +YY +DPRER
Sbjct: 64 SYYHRDPRER 73


>AT1G54217.1 | Symbols:  | Expressed protein |
          chr1:20244346-20245005 REVERSE
          Length = 102

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 29 DAADREKGKYTLLRD-PEEFQVGMYDKPLPCFGCGVGWFSFLLGFVFPLMWYYATILYFG 87
          +  +++KGKY L+RD  E+ ++G + KPLPCFG G+GWFSFLLGFVFP  WY AT LY  
Sbjct: 4  NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63

Query: 88 NYYRKDPRER 97
          +YY +DPRER
Sbjct: 64 SYYHRDPRER 73