Jatropha Genome Database

JcCA0076481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076481.10 + phase: 0 
         (275 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | ATEB1A; microtubu...   414   e-116
AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | ATEB1B (END BINDING...   403   e-113
AT5G67270.1 | Symbols: ATEB1C, EB1C, ATEB1H1 | ATEB1C (microtubu...   297   4e-81

>AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | ATEB1A; microtubule
           binding | chr3:17581353-17583346 FORWARD
          Length = 276

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/275 (72%), Positives = 228/275 (82%), Gaps = 11/275 (4%)

Query: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKV 60
           MA+NIGMMDSAYFVGRNEILTWIN+RL LNL+R+EEAASGAVQCQM+DMT+PGVVPMHKV
Sbjct: 1   MATNIGMMDSAYFVGRNEILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSINGG 120
           NFDAK EYDMIQNYKVLQ+VFNKLKI K +E+NRLVKGRPLDNLEFLQWLKR+CDSINGG
Sbjct: 61  NFDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRPLDNLEFLQWLKRFCDSINGG 120

Query: 121 IMNENYNPVERRIKGGKDRNSKGCPKTSKSLQSNIMHNSASGEPVGLSKTSGPKPXXXXX 180
           IMNENYNPVERR + GK+R+ KG  K  KSLQ+N  H   +   VGLSK SGPK      
Sbjct: 121 IMNENYNPVERRSRNGKERSVKGSNKIPKSLQTNNNHPPPNSSSVGLSKASGPK------ 174

Query: 181 XXXXXXXXXEIETLSKEITDLKLSVDHLEKERDFYFAKLRDIEILCQTPELEDIPMAVAI 240
                    E++ LSKE+ DLK+S D LEKERDFYF+KLRD+EILCQTPEL+D+P+ VA+
Sbjct: 175 ----SAKAAEVQALSKELVDLKISTDLLEKERDFYFSKLRDVEILCQTPELDDLPIVVAV 230

Query: 241 KKILYAADAKESALEEAQEYLNQALNGEVEDENEA 275
           KKILYA DA ESALE+AQEYLNQ+L G  +DE E 
Sbjct: 231 KKILYATDANESALEDAQEYLNQSL-GVEDDEAEG 264


>AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | ATEB1B (END BINDING
           PROTEIN 1B); microtubule binding |
           chr5:25092929-25095006 FORWARD
          Length = 293

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/266 (72%), Positives = 223/266 (83%), Gaps = 5/266 (1%)

Query: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKV 60
           MA+NIGMMDSAYFVGRNEIL+WIN+RL LNL+RIEEAASGAVQCQM+DMT+PGVVPMHKV
Sbjct: 1   MATNIGMMDSAYFVGRNEILSWINDRLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSINGG 120
           NF+AK EY+MIQNYKV+QEVF KLKI K +EVNRLVKGRPLDNLEFLQWLKR+CDSINGG
Sbjct: 61  NFEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRPLDNLEFLQWLKRFCDSINGG 120

Query: 121 IMNENYNPVERRIKGGKDRNSKGCPKTSKSLQSNIMHNSASGEPVGLS-KTSGPKPXXXX 179
           IMNENYNPVERR +GG++++ KG  K SKSLQ+N MH+     PV  S K +GPK     
Sbjct: 121 IMNENYNPVERRSRGGREKSVKGSSKISKSLQTNNMHHP----PVATSNKPAGPKQAKSH 176

Query: 180 XXXXXXXXXXEIETLSKEITDLKLSVDHLEKERDFYFAKLRDIEILCQTPELEDIPMAVA 239
                     E++ LSKE+ DLK+SVD LEKERDFYF+KLRDIEILCQTPEL+D+P+ VA
Sbjct: 177 GIGGGSNSSAEVQALSKEVEDLKVSVDLLEKERDFYFSKLRDIEILCQTPELDDLPIVVA 236

Query: 240 IKKILYAADAKESALEEAQEYLNQAL 265
           +KKILYA DA ES LEEAQE LNQ+L
Sbjct: 237 VKKILYATDANESVLEEAQECLNQSL 262


>AT5G67270.1 | Symbols: ATEB1C, EB1C, ATEB1H1 | ATEB1C (microtubule
           end binding protein 1); microtubule binding |
           chr5:26840248-26841984 REVERSE
          Length = 329

 Score =  297 bits (761), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 149/283 (52%), Positives = 189/283 (66%), Gaps = 40/283 (14%)

Query: 1   MASNIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKV 60
           MA+NIGMMDSAYFVGR+EIL WIN+ LQLNL+++EEA SGAV CQ+MD  +PG VPMHKV
Sbjct: 1   MATNIGMMDSAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGTVPMHKV 60

Query: 61  NFDAKTEYDMIQNYKVLQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSINGG 120
           NFDAK+EY+MIQNYKVLQ+VFNKLKI KHIEV++LVKGRPLDNLEF+QW+K+YCDS+NGG
Sbjct: 61  NFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKKYCDSVNGG 120

Query: 121 IMNENYNPVERR--IKGGKDRNSK-----------------------GCPKTSKSLQSNI 155
               NY+ +ERR   KGGK+   +                       G  K      +  
Sbjct: 121 --QHNYHALERREASKGGKEATKRAAATQQSGKSSSSSAPPRPSSSNGTRKHEPQSNNTG 178

Query: 156 MHNSASGEPVGLSKTSGPKPXXXXXXXXXXXXXXEIETLSKEITDLKLSVDHLEKERDFY 215
            H+S++G     SK S  +                +    ++IT+LKL +D LEKERDFY
Sbjct: 179 THHSSTGNHHHSSKPSAKQ-------------SKPVPAYDEKITELKLYIDSLEKERDFY 225

Query: 216 FAKLRDIEILCQTPELEDIPMAVAIKKILYAADAKESALEEAQ 258
           F+KLRD+EILCQ P+ E +P+  +IK+ILYAAD ++    E Q
Sbjct: 226 FSKLRDVEILCQNPDTEHLPLVGSIKRILYAADGEDVGAAETQ 268