Jatropha Genome Database

JcCA0076141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076141.10 + phase: 2 /pseudo/partial
         (378 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09860.1 | Symbols:  | nuclear matrix protein-related | chr5:...   309   2e-84

>AT5G09860.1 | Symbols:  | nuclear matrix protein-related |
           chr5:3066815-3070733 FORWARD
          Length = 599

 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 160/193 (82%)

Query: 186 FTEFFCNPVSLTLAPTKWHKFTATLMVVLNTFDAQPLSXXXXXXXXXXXXXXTFNIKYLT 245
             E+FCNP SLT A TKW KF+++L VVLNTFDAQPLS              TFNIKYLT
Sbjct: 222 LQEYFCNPASLTSASTKWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLT 281

Query: 246 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLTSESMKEEIKTCEERVKKLLE 305
           SSKLMGLELKD SFRRHIL+QCLI+FDYL+APGKNDKDL SE+MKEE+K+CE+RVKKLLE
Sbjct: 282 SSKLMGLELKDSSFRRHILLQCLIMFDYLRAPGKNDKDLPSETMKEELKSCEDRVKKLLE 341

Query: 306 MTPPKGKDFLHMVEHILEREKNWVWWKRDGCPAFEKQPIENKMVQDGVKKRKPRWRLGNK 365
           +TPPKGK+FL  VEHILEREKNWVWWKRDGCP FEKQPI+ K    G KKR+ RWRLGNK
Sbjct: 342 ITPPKGKEFLRAVEHILEREKNWVWWKRDGCPPFEKQPIDKKSPNAGQKKRRQRWRLGNK 401

Query: 366 ELSQLWKWADQNP 378
           ELSQLW+WADQNP
Sbjct: 402 ELSQLWRWADQNP 414