Jatropha Genome Database

JcCA0076121.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.30 - phase: 2 /pseudo/partial
         (287 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20070.2 | Symbols: TTN9 | TTN9 (TITAN9) | chr3:7004950-70066...   134   5e-32
AT3G20070.1 | Symbols: TTN9 | TTN9 (TITAN9) | chr3:7004950-70066...   134   5e-32

>AT3G20070.2 | Symbols: TTN9 | TTN9 (TITAN9) | chr3:7004950-7006625
           REVERSE
          Length = 282

 Score =  134 bits (338), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

Query: 169 VILQPEFCRRTVQISANNSSTNCQFQALIEYLLGMKFSTVIQSDDRICISALHQSSGYSF 228
           ++ QP+ CR T   S+  SS +C FQAL ++LLGMK ST      R CI A H ++G SF
Sbjct: 167 LVSQPQCCRTTYDGSS--SSASCTFQALGKHLLGMKLSTN-NKGKRACIVASHPTTGLSF 223

Query: 229 ILTWVDKDSAKEPELLYRASTLGTFERVAPEWMRSVLMFSTSMCPIFFERIARVIKMH 286
            LT+++  + +E ELLY+ ++LGTF+RVAPEWMR V+ FSTSMCPIFFER++RVIK++
Sbjct: 224 SLTFINNPNGEESELLYKPASLGTFQRVAPEWMREVIKFSTSMCPIFFERVSRVIKLN 281


>AT3G20070.1 | Symbols: TTN9 | TTN9 (TITAN9) | chr3:7004950-7006625
           REVERSE
          Length = 282

 Score =  134 bits (338), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

Query: 169 VILQPEFCRRTVQISANNSSTNCQFQALIEYLLGMKFSTVIQSDDRICISALHQSSGYSF 228
           ++ QP+ CR T   S+  SS +C FQAL ++LLGMK ST      R CI A H ++G SF
Sbjct: 167 LVSQPQCCRTTYDGSS--SSASCTFQALGKHLLGMKLSTN-NKGKRACIVASHPTTGLSF 223

Query: 229 ILTWVDKDSAKEPELLYRASTLGTFERVAPEWMRSVLMFSTSMCPIFFERIARVIKMH 286
            LT+++  + +E ELLY+ ++LGTF+RVAPEWMR V+ FSTSMCPIFFER++RVIK++
Sbjct: 224 SLTFINNPNGEESELLYKPASLGTFQRVAPEWMREVIKFSTSMCPIFFERVSRVIKLN 281