Jatropha Genome Database

JcCA0076121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12410.1 | Symbols:  | THUMP domain-containing protein | chr5...   105   1e-23

>AT5G12410.1 | Symbols:  | THUMP domain-containing protein |
           chr5:4021974-4023950 REVERSE
          Length = 376

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 54/68 (79%)

Query: 76  LYEARANTGIDRMKIINSVAKSVPGPHKVDLSNPXXXXXXXXXXXXCLIGVVEKYKELAK 135
           LY ARANTG+DRMKIIN++AKS+P PHKVDLSNP            CLIGVVEKYKELAK
Sbjct: 307 LYGARANTGLDRMKIINTIAKSIPAPHKVDLSNPEMTIVVEIIKTVCLIGVVEKYKELAK 366

Query: 136 YNMRQLTS 143
           YN+RQLTS
Sbjct: 367 YNLRQLTS 374