Jatropha Genome Database

JcCA0076041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076041.10 - phase: 0 /partial
         (78 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21060.3 | Symbols:  | homoserine dehydrogenase family protei...    85   1e-17
AT5G21060.1 | Symbols:  | homoserine dehydrogenase family protei...    85   1e-17
AT5G21060.2 | Symbols:  | homoserine dehydrogenase family protei...    84   1e-17

>AT5G21060.3 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 378

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 52/78 (66%)

Query: 1   MDVXXXXXXXXXXXXXXINLDNIEIESLYPDEMGPHAMSVEKFLGSGIALLDNNIQERVK 60
           MDV              I +D+I+IESLYP+EMGP  MSV+ FL +GI  LD NI+ERVK
Sbjct: 236 MDVARKGLILARLLGKRIIMDSIKIESLYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVK 295

Query: 61  KASLNQNVLRYVCVIEGS 78
           KAS    VLRYVCVIEGS
Sbjct: 296 KASSKGCVLRYVCVIEGS 313


>AT5G21060.1 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 376

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 52/78 (66%)

Query: 1   MDVXXXXXXXXXXXXXXINLDNIEIESLYPDEMGPHAMSVEKFLGSGIALLDNNIQERVK 60
           MDV              I +D+I+IESLYP+EMGP  MSV+ FL +GI  LD NI+ERVK
Sbjct: 234 MDVARKGLILARLLGKRIIMDSIKIESLYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVK 293

Query: 61  KASLNQNVLRYVCVIEGS 78
           KAS    VLRYVCVIEGS
Sbjct: 294 KASSKGCVLRYVCVIEGS 311


>AT5G21060.2 | Symbols:  | homoserine dehydrogenase family protein |
           chr5:7149153-7152745 REVERSE
          Length = 378

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 52/78 (66%)

Query: 1   MDVXXXXXXXXXXXXXXINLDNIEIESLYPDEMGPHAMSVEKFLGSGIALLDNNIQERVK 60
           MDV              I +D+I+IESLYP+EMGP  MSV+ FL +GI  LD NI+ERVK
Sbjct: 236 MDVARKGLILARLLGKRIIMDSIKIESLYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVK 295

Query: 61  KASLNQNVLRYVCVIEGS 78
           KAS    VLRYVCVIEGS
Sbjct: 296 KASSKGCVLRYVCVIEGS 313