Jatropha Genome Database

JcCA0075831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075831.10 - phase: 0 
         (235 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDP...   286   8e-78
AT4G11010.1 | Symbols: NDPK3 | NDPK3 (NUCLEOSIDE DIPHOSPHATE KIN...   174   3e-44
AT4G23900.1 | Symbols:  | nucleoside diphosphate kinase 4 (NDK4)...   174   5e-44
AT4G09320.1 | Symbols: NDPK1 | NDPK1; ATP binding / nucleoside d...   171   5e-43
AT1G17410.1 | Symbols:  | nucleoside diphosphate kinase family p...    90   1e-18

>AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2
           | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding /
           nucleoside diphosphate kinase/ protein binding |
           chr5:25372122-25373838 REVERSE
          Length = 231

 Score =  286 bits (732), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 139/193 (72%), Positives = 152/193 (78%)

Query: 43  SHLAAFHSPSHLFSYSPSRPYNAKHRKPTKTHIFLPHLVASLEQVEETYIMVKPDGVQRG 102
           + LAAF     LFS + +     +     ++ IFLPHLVAS+E VEETYIMVKPDG+QRG
Sbjct: 39  TALAAFRPQFRLFSRNSASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRG 98

Query: 103 LVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYKDLKARPFFPKLINYITSGPVVCMAWE 162
           LVGEIISRFE            QCPKELAEEHYKDL A+ FFP LI YITSGPVVCMAWE
Sbjct: 99  LVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWE 158

Query: 163 GVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIALWFKEGEI 222
           GVGVVASARKLIG TDPLQAEPGTIRGDLAVQTGRN+VHGSDSPENGKREI LWFKEGE+
Sbjct: 159 GVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGEL 218

Query: 223 CQWTPALASWFRE 235
           C+W  ALA+W RE
Sbjct: 219 CKWDSALATWLRE 231


>AT4G11010.1 | Symbols: NDPK3 | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE
           3); ATP binding / nucleoside diphosphate kinase |
           chr4:6732780-6734298 REVERSE
          Length = 238

 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 101/148 (68%)

Query: 86  QVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYKDLKARPFFP 145
           ++E T+I +KPDGVQRGL+ EIISRFE               K+ A++HY DLK RPFF 
Sbjct: 87  EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFN 146

Query: 146 KLINYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 205
            L ++++SGPV+ M WEG GV+   RKLIG+TDP ++EPGTIRGDLAV  GRN++HGSD 
Sbjct: 147 GLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDG 206

Query: 206 PENGKREIALWFKEGEICQWTPALASWF 233
           PE  K EI+LWFK  E+  +T     W 
Sbjct: 207 PETAKDEISLWFKPQELVSYTSNSEKWL 234


>AT4G23900.1 | Symbols:  | nucleoside diphosphate kinase 4 (NDK4) |
           chr4:12424505-12426318 FORWARD
          Length = 237

 Score =  174 bits (441), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 100/148 (67%)

Query: 86  QVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYKDLKARPFFP 145
           ++E T+I +KPDGVQRGL+ EII+RFE               K  A++HY DLK RPFF 
Sbjct: 86  EMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFN 145

Query: 146 KLINYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 205
            L N+++SGPVV M WEG GV+   RKLIG+TDP ++EPGTIRGDLAV  GRN++HGSD 
Sbjct: 146 GLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDG 205

Query: 206 PENGKREIALWFKEGEICQWTPALASWF 233
           PE  K EI+LWFK  E+  +T     W 
Sbjct: 206 PETAKDEISLWFKPEELVSYTSNAEKWI 233


>AT4G09320.1 | Symbols: NDPK1 | NDPK1; ATP binding / nucleoside
           diphosphate kinase | chr4:5923424-5924366 FORWARD
          Length = 169

 Score =  171 bits (432), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 77  LPHLVASLEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYK 136
           L  + ++ + +E+T+IM+KPDGVQRGL+GE+I RFE               +  AE+HY+
Sbjct: 11  LLRITSNKKTMEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYE 70

Query: 137 DLKARPFFPKLINYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTG 196
           DL ++ FF  L++YI SGPVV M WEG  VV + RK+IG+T+P  +EPGTIRGD A+  G
Sbjct: 71  DLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIG 130

Query: 197 RNVVHGSDSPENGKREIALWFKEGEICQWTPALASWFRE 235
           RNV+HGSDS E+ ++EIALWF +G +  W  ++  W  E
Sbjct: 131 RNVIHGSDSVESARKEIALWFPDGPV-NWQSSVHPWVYE 168


>AT1G17410.1 | Symbols:  | nucleoside diphosphate kinase family
           protein | chr1:5968627-5969780 REVERSE
          Length = 181

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 88  EETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKELAEEHYKDLKARPFFPKL 147
           E T  M+KPDGV      EI +               Q  KE A   Y++  +R FFP L
Sbjct: 33  ERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSFFPHL 92

Query: 148 INYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAE---PGTIRGDLAVQTGRNVVHGSD 204
           + Y+TSGPV+ M  E    V+  R LIG TD  +A+   P +IR      + +N VHGSD
Sbjct: 93  VTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSD 152

Query: 205 SPENGKREIALWFKE 219
           S  + +REI  +FK+
Sbjct: 153 STSSAEREIKFFFKD 167