Jatropha Genome Database

JcCA0075421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075421.20 - phase: 0 /pseudo
         (638 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75730.1 | Symbols:  | unknown protein | chr1:28435991-284389...    81   2e-15

>AT1G75730.1 | Symbols:  | unknown protein | chr1:28435991-28438983
           REVERSE
          Length = 589

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 39/225 (17%)

Query: 231 ISLLDRKPEIALGQSMTIGSQLDQHHTISESK---NNGPALWPGLSSTVSTTASHGPLSQ 287
           +  +DR     L QS ++    D H  ++E+K   +NG ALWPGLSST   + +   LS+
Sbjct: 230 VDFIDR-----LKQSSSVKV-TDAHARVNETKVTTSNGLALWPGLSSTTVHSGAQV-LSK 282

Query: 288 SCAVKVPAWLGS--RPGFLQNXXXXXXXXXXXTDRRSWKRCAAHGYISHLIRALQTSDGK 345
             + K+P W+G    P    N              R  KRCA+H YIS LI+ LQTS  K
Sbjct: 283 PSSTKLPPWMGQAVSPS---NTASLLNCEPLRVQPRKLKRCASHIYISRLIKVLQTS--K 337

Query: 346 ESLP-VPQNQLRPHEILKQGV---LMTINDFNRSRTDLSGITSAASTIVNPVEKNSNDNK 401
            SL  + QN+ R  E+ ++ +   ++TINDF                IV+P ++  N + 
Sbjct: 338 SSLATLNQNEQRYSEMSERRLPDSVITINDFK--------------AIVSPPKRYQNPHL 383

Query: 402 IGILQHLRP---HQDNSPAALA-SGMYTSHKQSFNFLSLTAGGGG 442
           + + +   P    +D +  AL   G +TS KQSF+FLSL++ G  
Sbjct: 384 LDMHRAHNPKPVQEDMTKLALELYGPHTSQKQSFDFLSLSSAGAA 428