Jatropha Genome Database

JcCA0075421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075421.10 + phase: 0 
         (99 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47830.1 | Symbols:  | clathrin coat assembly protein, putati...   177   1e-45
AT2G17380.1 | Symbols: AP19 | AP19; protein binding / protein tr...   115   5e-27
AT4G35410.2 | Symbols:  | clathrin adaptor complex small chain f...   115   8e-27
AT3G50860.1 | Symbols:  | clathrin adaptor complex small chain f...    88   1e-18
AT2G19790.1 | Symbols:  | clathrin adaptor complex small chain f...    87   2e-18
AT4G35410.1 | Symbols:  | clathrin adaptor complex small chain f...    85   9e-18

>AT1G47830.1 | Symbols:  | clathrin coat assembly protein, putative
           | chr1:17613346-17614784 REVERSE
          Length = 142

 Score =  177 bits (448), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/93 (92%), Positives = 91/93 (97%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHK
Sbjct: 50  VEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHK 109

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEKLE 99
           VYLILDEFILAGELQETSK+AIIERM ELEKL+
Sbjct: 110 VYLILDEFILAGELQETSKRAIIERMSELEKLQ 142


>AT2G17380.1 | Symbols: AP19 | AP19; protein binding / protein
           transporter | chr2:7553122-7554887 FORWARD
          Length = 161

 Score =  115 bits (288), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 71/92 (77%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           I++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 50  IEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEKL 98
            Y ILDE ++AGELQE+SKK +   +   ++L
Sbjct: 110 AYYILDELLIAGELQESSKKTVARIISAQDQL 141


>AT4G35410.2 | Symbols:  | clathrin adaptor complex small chain
           family protein | chr4:16832572-16833796 FORWARD
          Length = 162

 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 71/92 (77%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 50  VEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEKL 98
            Y ILDE ++AGELQE+SKK +   +   ++L
Sbjct: 110 AYYILDELLIAGELQESSKKTVARIISAQDQL 141


>AT3G50860.1 | Symbols:  | clathrin adaptor complex small chain
           family protein | chr3:18902346-18903959 FORWARD
          Length = 166

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 62/88 (70%)

Query: 12  HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 71
            +++Y+ YA L+F L  D ++NELA L+ I + VE LD  FSNVCELD+VFN+ K++ +L
Sbjct: 60  SRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVL 119

Query: 72  DEFILAGELQETSKKAIIERMGELEKLE 99
           DE +  G++ ETS   +++ + E+ KLE
Sbjct: 120 DEIVFGGQVLETSSAEVMKAVEEISKLE 147


>AT2G19790.1 | Symbols:  | clathrin adaptor complex small chain
           family protein | chr2:8527302-8528395 FORWARD
          Length = 143

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 63/91 (69%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           ++ R +K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  K
Sbjct: 51  VEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEK 110

Query: 67  VYLILDEFILAGELQETSKKAIIERMGELEK 97
            + +L+E ++ G + ETSK  I+  +  ++K
Sbjct: 111 AHFMLEEMVMNGCIVETSKANILSPIQLMDK 141


>AT4G35410.1 | Symbols:  | clathrin adaptor complex small chain
           family protein | chr4:16832572-16833476 FORWARD
          Length = 124

 Score = 84.7 bits (208), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 7   IKFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK 66
           +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK
Sbjct: 50  VEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

Query: 67  V 67
           V
Sbjct: 110 V 110