Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.40 - phase: 2 /partial
         (59 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15200.1 | Symbols:  | 40S ribosomal protein S9 (RPS9B) | chr...    95   8e-21
AT5G39850.1 | Symbols:  | 40S ribosomal protein S9 (RPS9C) | chr...    91   1e-19

>AT5G15200.1 | Symbols:  | 40S ribosomal protein S9 (RPS9B) |
           chr5:4935124-4936334 REVERSE
          Length = 198

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 50/50 (100%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKKAS 50
           VG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+++ASKKAS
Sbjct: 138 VGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKAS 187


>AT5G39850.1 | Symbols:  | 40S ribosomal protein S9 (RPS9C) |
           chr5:15950053-15951171 FORWARD
          Length = 197

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/50 (86%), Positives = 49/50 (98%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAASKKAS 50
           VGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N+RA +KKAS
Sbjct: 138 VGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKAS 187