Jatropha Genome Database
- JcCA0075121.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0075121.10 + phase: 0 /partial
(74 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03780.3 | Symbols: ATMS2 | AtMS2; 5-methyltetrahydropteroylt... 139 4e-34
AT3G03780.2 | Symbols: ATMS2 | AtMS2; 5-methyltetrahydropteroylt... 139 4e-34
AT3G03780.1 | Symbols: ATMS2 | AtMS2; 5-methyltetrahydropteroylt... 139 4e-34
AT5G17920.2 | Symbols: ATCIMS | ATMS1; 5-methyltetrahydropteroyl... 136 3e-33
AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 | ATMS1; 5-methylte... 136 3e-33
AT5G20980.2 | Symbols: ATMS3 | ATMS3 (methionine synthase 3); 5-... 132 3e-32
AT5G20980.1 | Symbols: ATMS3 | ATMS3 (methionine synthase 3); 5-... 132 3e-32
>AT3G03780.3 | Symbols: ATMS2 | AtMS2;
5-methyltetrahydropteroyltriglutamate-homocysteine
S-methyltransferase/ methionine synthase |
chr3:957602-960740 FORWARD
Length = 765
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 69/74 (93%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAQDLEKVAFELRESIWKQMAGAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKSSA DL+KV+ +LR IWKQM+ AGIKYIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSADDLQKVSADLRSDIWKQMSAAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAL 74
TFS+YDQVLDTTA+
Sbjct: 61 TFSHYDQVLDTTAM 74
>AT3G03780.2 | Symbols: ATMS2 | AtMS2;
5-methyltetrahydropteroyltriglutamate-homocysteine
S-methyltransferase/ methionine synthase |
chr3:957602-960740 FORWARD
Length = 765
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 69/74 (93%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAQDLEKVAFELRESIWKQMAGAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKSSA DL+KV+ +LR IWKQM+ AGIKYIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSADDLQKVSADLRSDIWKQMSAAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAL 74
TFS+YDQVLDTTA+
Sbjct: 61 TFSHYDQVLDTTAM 74
>AT3G03780.1 | Symbols: ATMS2 | AtMS2;
5-methyltetrahydropteroyltriglutamate-homocysteine
S-methyltransferase/ methionine synthase |
chr3:957602-960740 FORWARD
Length = 765
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 69/74 (93%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAQDLEKVAFELRESIWKQMAGAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKSSA DL+KV+ +LR IWKQM+ AGIKYIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSADDLQKVSADLRSDIWKQMSAAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAL 74
TFS+YDQVLDTTA+
Sbjct: 61 TFSHYDQVLDTTAM 74
>AT5G17920.2 | Symbols: ATCIMS | ATMS1;
5-methyltetrahydropteroyltriglutamate-homocysteine
S-methyltransferase/ methionine synthase |
chr5:5935771-5939195 FORWARD
Length = 765
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAQDLEKVAFELRESIWKQMAGAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKS+A+DL+KV+ +LR SIWKQM+ AG K+IPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60
Query: 61 TFSYYDQVLDTTAL 74
TF++YDQVLDTTA+
Sbjct: 61 TFAHYDQVLDTTAM 74
>AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 | ATMS1;
5-methyltetrahydropteroyltriglutamate-homocysteine
S-methyltransferase/ copper ion binding / methionine
synthase | chr5:5935771-5939195 FORWARD
Length = 765
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAQDLEKVAFELRESIWKQMAGAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKS+A+DL+KV+ +LR SIWKQM+ AG K+IPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60
Query: 61 TFSYYDQVLDTTAL 74
TF++YDQVLDTTA+
Sbjct: 61 TFAHYDQVLDTTAM 74
>AT5G20980.2 | Symbols: ATMS3 | ATMS3 (methionine synthase 3);
5-methyltetrahydropteroyltriglutamate-homocysteine
S-methyltransferase/ methionine synthase |
chr5:7124397-7128353 REVERSE
Length = 812
Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 67/74 (90%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAQDLEKVAFELRESIWKQMAGAGIKYIPSN 60
M+SHIVGYPR+GPKRELKFALESFWDGK++ DL+ VA LR+SIWK MA AGIKYIPSN
Sbjct: 49 MSSHIVGYPRIGPKRELKFALESFWDGKTNVDDLQNVAANLRKSIWKHMAHAGIKYIPSN 108
Query: 61 TFSYYDQVLDTTAL 74
TFSYYDQ+LDTTA+
Sbjct: 109 TFSYYDQMLDTTAM 122
>AT5G20980.1 | Symbols: ATMS3 | ATMS3 (methionine synthase 3);
5-methyltetrahydropteroyltriglutamate-homocysteine
S-methyltransferase/ methionine synthase |
chr5:7124397-7128353 REVERSE
Length = 812
Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 67/74 (90%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAQDLEKVAFELRESIWKQMAGAGIKYIPSN 60
M+SHIVGYPR+GPKRELKFALESFWDGK++ DL+ VA LR+SIWK MA AGIKYIPSN
Sbjct: 49 MSSHIVGYPRIGPKRELKFALESFWDGKTNVDDLQNVAANLRKSIWKHMAHAGIKYIPSN 108
Query: 61 TFSYYDQVLDTTAL 74
TFSYYDQ+LDTTA+
Sbjct: 109 TFSYYDQMLDTTAM 122