Jatropha Genome Database

JcCA0074951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074951.10 + phase: 2 /pseudo
         (151 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13380.1 | Symbols:  | unknown protein | chr1:4589218-4590362...    99   1e-21
AT4G27435.1 | Symbols:  | unknown protein | chr4:13723903-137248...    53   6e-08
AT1G52910.1 | Symbols:  | unknown protein | chr1:19708114-197091...    50   6e-07
AT1G61065.1 | Symbols:  | unknown protein | chr1:22490430-224913...    47   4e-06
AT1G68220.1 | Symbols:  | unknown protein | chr1:25570322-255715...    47   5e-06
AT3G15480.1 | Symbols:  | unknown protein | chr3:5226489-5227666...    47   6e-06

>AT1G13380.1 | Symbols:  | unknown protein | chr1:4589218-4590362
           REVERSE
          Length = 188

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKA 129
           EAC++AGATKNAYHTKY   + +Q FSC +LRK            TM+LNVYYYMYF+K+
Sbjct: 110 EACVIAGATKNAYHTKY---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKS 166

Query: 130 TAPQAASKANRTSSNVGMAGYA 151
            +   A KANR+SSN+GMAGYA
Sbjct: 167 VSSPPAHKANRSSSNIGMAGYA 188


>AT4G27435.1 | Symbols:  | unknown protein | chr4:13723903-13724872
           FORWARD
          Length = 173

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILN-VYYYMYFSK 128
           E CLLAG+ +NAYHTKYR M       C+TLRK              I++  YY+ YFS 
Sbjct: 106 EICLLAGSVENAYHTKYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSA 165

Query: 129 ATA 131
           A A
Sbjct: 166 AEA 168


>AT1G52910.1 | Symbols:  | unknown protein | chr1:19708114-19709128
           FORWARD
          Length = 175

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQN-FSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSK 128
           E CLLAG+ +NAYHT YR M   +N  SCE +RK            T I++ +YY+ +S+
Sbjct: 106 EVCLLAGSIRNAYHTTYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSR 165

Query: 129 A 129
           A
Sbjct: 166 A 166


>AT1G61065.1 | Symbols:  | unknown protein | chr1:22490430-22491330
           REVERSE
          Length = 180

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKA 129
           + CLLAG+ +NAYHTKYR      + SC +LRK            T I++  YY+  S+A
Sbjct: 105 QVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRA 164

Query: 130 TAPQAASKAN 139
              Q +    
Sbjct: 165 KDFQPSRDPG 174


>AT1G68220.1 | Symbols:  | unknown protein | chr1:25570322-25571562
           FORWARD
          Length = 201

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKA 129
           EACLL G+ +NAYHTK  G+   +  SC  L              ++I  + YY+  SKA
Sbjct: 108 EACLLGGSARNAYHTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKA 167

Query: 130 TAPQAASKANRTSSNVGM 147
                  K      N+GM
Sbjct: 168 DT-GGWEKHQNDGINIGM 184


>AT3G15480.1 | Symbols:  | unknown protein | chr3:5226489-5227666
           REVERSE
          Length = 175

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQN-FSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSK 128
           E CLLA + +NAYHT+YR M   ++  SCE +RK            T I++ +YY+ +S+
Sbjct: 106 EMCLLAASIRNAYHTQYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSR 165

Query: 129 A 129
           A
Sbjct: 166 A 166