Jatropha Genome Database

JcCA0074421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074421.20 - phase: 0 /partial
         (131 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35830.2 | Symbols:  | aconitate hydratase, cytoplasmic / cit...   204   1e-53
AT4G35830.1 | Symbols:  | aconitate hydratase, cytoplasmic / cit...   204   1e-53
AT2G05710.1 | Symbols:  | aconitate hydratase, cytoplasmic, puta...   202   5e-53
AT4G26970.1 | Symbols:  | aconitate hydratase/ copper ion bindin...   194   1e-50
AT5G54950.1 | Symbols:  | aconitate hydratase-related / citrate ...    89   1e-18

>AT4G35830.2 | Symbols:  | aconitate hydratase, cytoplasmic /
           citrate hydro-lyase / aconitase (ACO) |
           chr4:16973007-16977278 REVERSE
          Length = 795

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/108 (88%), Positives = 104/108 (96%)

Query: 20  AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKTGEDADTLGLTGHERYSIDLPNSV 79
           AKGPMLLGVKAVI+KSFERIHRSNLVGMGIIPLCFK GEDA+TLGLTG E Y+I+LPN+V
Sbjct: 686 AKGPMLLGVKAVISKSFERIHRSNLVGMGIIPLCFKAGEDAETLGLTGQELYTIELPNNV 745

Query: 80  SEIRPGQDVKVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI 127
           SEI+PGQDV V+T+NGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI
Sbjct: 746 SEIKPGQDVTVVTNNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI 793


>AT4G35830.1 | Symbols:  | aconitate hydratase, cytoplasmic /
           citrate hydro-lyase / aconitase (ACO) |
           chr4:16973007-16977949 REVERSE
          Length = 898

 Score =  204 bits (519), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/108 (88%), Positives = 104/108 (96%)

Query: 20  AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKTGEDADTLGLTGHERYSIDLPNSV 79
           AKGPMLLGVKAVI+KSFERIHRSNLVGMGIIPLCFK GEDA+TLGLTG E Y+I+LPN+V
Sbjct: 789 AKGPMLLGVKAVISKSFERIHRSNLVGMGIIPLCFKAGEDAETLGLTGQELYTIELPNNV 848

Query: 80  SEIRPGQDVKVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI 127
           SEI+PGQDV V+T+NGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI
Sbjct: 849 SEIKPGQDVTVVTNNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI 896


>AT2G05710.1 | Symbols:  | aconitate hydratase, cytoplasmic,
           putative / citrate hydro-lyase/aconitase, putative |
           chr2:2141591-2146350 FORWARD
          Length = 990

 Score =  202 bits (514), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 100/107 (93%)

Query: 20  AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKTGEDADTLGLTGHERYSIDLPNSV 79
           AKGPML GVKAVIAKSFERIHRSNLVGMGIIPLCFK+GEDADTLGLTGHERY+I LP  +
Sbjct: 881 AKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIHLPTDI 940

Query: 80  SEIRPGQDVKVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNL 126
           SEIRPGQDV V TDNGKSFTCT+RFDTEVELAYF+HGGIL YVIRNL
Sbjct: 941 SEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNL 987


>AT4G26970.1 | Symbols:  | aconitate hydratase/ copper ion binding |
           chr4:13543077-13548427 FORWARD
          Length = 995

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 98/107 (91%)

Query: 20  AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKTGEDADTLGLTGHERYSIDLPNSV 79
           AKGP+LLGVKAVIAKSFERIHRSNL GMGIIPLCFK GEDA+TLGLTGHERY++ LP  V
Sbjct: 886 AKGPLLLGVKAVIAKSFERIHRSNLAGMGIIPLCFKAGEDAETLGLTGHERYTVHLPTKV 945

Query: 80  SEIRPGQDVKVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNL 126
           S+IRPGQDV V TD+GKSF CTLRFDTEVELAY+DHGGIL YVIR+L
Sbjct: 946 SDIRPGQDVTVTTDSGKSFVCTLRFDTEVELAYYDHGGILPYVIRSL 992


>AT5G54950.1 | Symbols:  | aconitate hydratase-related / citrate
           hydro-lyase-related / aconitase-related |
           chr5:22309832-22310242 REVERSE
          Length = 74

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 50/62 (80%)

Query: 52  LCFKTGEDADTLGLTGHERYSIDLPNSVSEIRPGQDVKVLTDNGKSFTCTLRFDTEVELA 111
           + FK+GEDA+TLGLTGHE Y+I LP++++EI+PGQD+ V TD  KSF CTLR DTE+ + 
Sbjct: 1   MAFKSGEDAETLGLTGHELYTIHLPSNINEIKPGQDITVTTDTAKSFVCTLRLDTEIWVL 60

Query: 112 YF 113
            F
Sbjct: 61  CF 62