Jatropha Genome Database

JcCA0074091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074091.10 - phase: 0 /partial
         (207 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60600.2 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOP...   207   4e-54
AT1G60600.1 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOP...   174   5e-44

>AT1G60600.2 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST
           DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate
           octaprenyltransferase/ prenyltransferase |
           chr1:22324807-22326759 REVERSE
          Length = 382

 Score =  207 bits (526), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 124/158 (78%), Gaps = 4/158 (2%)

Query: 44  KRQRQCGQIFCESTSHYTTNANEGGKEEDIAKVTLVWRAIKLPIYSVALVPLTVGGAAAY 103
           +R  +   IFC+S      +A +  +EE+I +  L+WRAIKLP+YSVALVPLTVG +AAY
Sbjct: 57  RRNLRVRPIFCKSYG----DAAKVYQEEEIPRAKLIWRAIKLPMYSVALVPLTVGASAAY 112

Query: 104 LHTGVFSARRYFVLLASSILIITWLNLSNDVYDFDTGADKNKKESVVNLVGSRSGTLFAA 163
           L TG+F ARRY  LL SSILIITWLNLSNDVYDFDTGADKNK ESVVNLVGSR+GTL AA
Sbjct: 113 LETGLFLARRYVTLLLSSILIITWLNLSNDVYDFDTGADKNKMESVVNLVGSRTGTLAAA 172

Query: 164 YLSLALGFLGLTRTSLGAGNVQAILLLACAVICGYIYQ 201
             SLALG  GL  TSL A N++AILLLA A++CGY+YQ
Sbjct: 173 ITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQ 210


>AT1G60600.1 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST
           DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate
           octaprenyltransferase/ prenyltransferase |
           chr1:22324807-22326395 REVERSE
          Length = 287

 Score =  174 bits (440), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 98/115 (85%)

Query: 87  IYSVALVPLTVGGAAAYLHTGVFSARRYFVLLASSILIITWLNLSNDVYDFDTGADKNKK 146
           +YSVALVPLTVG +AAYL TG+F ARRY  LL SSILIITWLNLSNDVYDFDTGADKNK 
Sbjct: 1   MYSVALVPLTVGASAAYLETGLFLARRYVTLLLSSILIITWLNLSNDVYDFDTGADKNKM 60

Query: 147 ESVVNLVGSRSGTLFAAYLSLALGFLGLTRTSLGAGNVQAILLLACAVICGYIYQ 201
           ESVVNLVGSR+GTL AA  SLALG  GL  TSL A N++AILLLA A++CGY+YQ
Sbjct: 61  ESVVNLVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQ 115