Jatropha Genome Database

JcCA0074011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074011.10 - phase: 0 /pseudo
         (768 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLAST...  1013   0.0  

>AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1
           (RETINOBLASTOMA-RELATED 1); transcription factor binding
           | chr3:3913671-3918433 REVERSE
          Length = 1013

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/727 (69%), Positives = 574/727 (78%), Gaps = 26/727 (3%)

Query: 19  TEVRFSEFCKTGLCLDEDTCKEALQLFKETKHLLSANISSIGNGTR-------------- 64
           +E    + C+  L LD  TC EAL+LF ETK +LSA++S+IG+GTR              
Sbjct: 19  SEASLLDICEKVLSLDGSTCDEALKLFTETKRILSASMSNIGSGTREEVERFWFAFILYS 78

Query: 65  ---LSEKXXXXXXXXXXXXGLTLCQILRCAKLNIVDFFKELPQYVVKAGPILSNMYGADW 121
              LS +               LCQILR  KLNIVDFFKELPQ+VVKAG +L  +YGADW
Sbjct: 79  VKRLSVRKEADGLSVSGDNEFNLCQILRALKLNIVDFFKELPQFVVKAGSVLGELYGADW 138

Query: 122 ENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDANVDKQSAVSSETAYLSEYHRFGWL 181
           ENRL+AKE+QANFVHLS+LS++YKR +RE FLT DAN +K SA SS   YL + +RFGWL
Sbjct: 139 ENRLQAKEVQANFVHLSLLSKYYKRGFREFFLTYDANAEKNSANSS--TYLLDSYRFGWL 196

Query: 182 LFLALRVHAFSRFKDLVTCTNGLVSVLAVLMIHVPVHCRNFNLNDSQWFVKKGDKGVDLL 241
           LFLALR HAFSRFKDLVTC+NG+VS+LA+L+IHVP   RNF++ DS  FVKKGDKGVDL+
Sbjct: 197 LFLALRNHAFSRFKDLVTCSNGVVSILAILIIHVPCRFRNFSIQDSSRFVKKGDKGVDLV 256

Query: 242 ASLCNKYDTSEDELRKTMEKTNNLIADLLKKKPRLAPECKNENLDDINPDGLIYYEDLME 301
           ASLC  YD SEDELR  ++K NNL+  +LKKKP  A EC+ + LD+I+PDGL Y+EDL+E
Sbjct: 257 ASLCKIYDASEDELRIVIDKANNLVETILKKKPSPASECQTDKLDNIDPDGLTYFEDLLE 316

Query: 302 ESSLQTSLSILEKDYDDAIRCKGELDERVFINDEDXXXXXXXXXXXAINVTGTKRKFDQM 361
           E+S+ TSL  LEKDY D    KGELDERVFIN+ED           A+N+TG KRK D +
Sbjct: 317 ETSISTSLITLEKDYYDG---KGELDERVFINEEDSLLGSGSLSAGAVNITGVKRKIDAL 373

Query: 362 SSPTKTITSPLSCHQSPASHANGIFGSTNPKMAATPVSTAMTTAKWLRTVISPLPSKPSA 421
           SSP +T  SPLS H+SPA+  NGI G+T  K+AATPVSTAMTTAKWLRTVISPL  KPS 
Sbjct: 374 SSPARTFISPLSPHKSPAAKTNGISGAT--KLAATPVSTAMTTAKWLRTVISPLLPKPSP 431

Query: 422 QLERFLASCDRDVTNDVIRRAQIMLEAIFPSSALGERCVTGSLQSTKLMDNIWAEQRRLE 481
            LE FL SCDRD+TNDV RRA I+LEAIFP+S+LG +C  GSLQ+  LMD+IWAEQRRLE
Sbjct: 432 GLEHFLKSCDRDITNDVTRRAHIILEAIFPNSSLGAQCGGGSLQAVDLMDDIWAEQRRLE 491

Query: 482 ALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAV 541
           A KLYYRVLEAMC AEAQILHA NL SLLTNERFHRCMLACSAELVLATHKT+TMLFPAV
Sbjct: 492 ACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSAELVLATHKTITMLFPAV 551

Query: 542 LERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVAR 601
           LERTGITAFDLSKVIESFIRHE+SLPRELRRHLNSLEERLLESMVWEKGSSMYNSL VAR
Sbjct: 552 LERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAR 611

Query: 602 PSLSAEINRLGLLAEPMPSLDAIAMHINFXXXXXXXXXXXQKHELCPGQNGDIRSPKRPC 661
           PSL+ EIN+LGLLAEPMPSLDAIA  INF           QKHE CPGQNG IRSPKR C
Sbjct: 612 PSLALEINQLGLLAEPMPSLDAIAALINF-SDGANHASSVQKHETCPGQNGGIRSPKRLC 670

Query: 662 PDYRSVLVERNSFTSPVKDRLLAFSNLKSK-LPPPLQSAFASPTRPNPGGGGETCAETGI 720
            DYRS+LVERNSFTSPVKDRLLA  N+KSK LPPPLQSAFASPTRPNPGGGGETCAETGI
Sbjct: 671 TDYRSILVERNSFTSPVKDRLLALGNVKSKMLPPPLQSAFASPTRPNPGGGGETCAETGI 730

Query: 721 NVFFSKV 727
           N+FF+K+
Sbjct: 731 NIFFTKI 737