Jatropha Genome Database

JcCA0071981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071981.20 - phase: 2 /partial
         (283 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07270.1 | Symbols:  | cell division control protein CDC6b, p...   406   e-114
AT2G29680.2 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTRO...   393   e-110
AT2G29680.1 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTRO...   376   e-104
AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITIO...    96   3e-20
AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF ...    83   2e-16

>AT1G07270.1 | Symbols:  | cell division control protein CDC6b,
           putative (CDC6b) | chr1:2229757-2232897 REVERSE
          Length = 505

 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/281 (70%), Positives = 226/281 (80%), Gaps = 18/281 (6%)

Query: 1   LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMV 60
           LIIADE+DYLITKDR VL+DLFMLTT PFSRCILIGVANAIDLADRFLP+L+SLNCKPMV
Sbjct: 242 LIIADEMDYLITKDRGVLYDLFMLTTLPFSRCILIGVANAIDLADRFLPKLKSLNCKPMV 301

Query: 61  VTFRAYSKEQILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEIL 120
           +TFRAYSK+QILRILQERL  L +  F P ALELCARKVAAASGDMRKALCVCRSA+EIL
Sbjct: 302 ITFRAYSKDQILRILQERLRVLSYVAFQPKALELCARKVAAASGDMRKALCVCRSALEIL 361

Query: 121 EAELRESTGNLNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDT 180
           E E R STG             Q   P        D S+VR+DHMA ALSK ++SP+V+T
Sbjct: 362 EIETRGSTGP----------ESQGPTP--------DDSVVRMDHMAAALSKTFKSPVVET 403

Query: 181 IQSLPQHQQIILCAAVKFFRGGKKDTIVGELNKYYIDVCKSTMIPPVGISEFLSMCRVLN 240
           IQSLPQHQQII+CAA K FRG KKD  VGELNK Y+++CKS MI P GI+EF +MC VLN
Sbjct: 404 IQSLPQHQQIIICAAAKAFRGSKKDATVGELNKLYLEICKSWMISPAGITEFTNMCTVLN 463

Query: 241 DQGLLKLGQSRDDKLRRLMLKVDAADIIFALQGVRFFRNCL 281
           DQG+LK+GQ+R DKL+R+ L+VD +DI FALQ +RFFRNCL
Sbjct: 464 DQGILKVGQARRDKLKRVSLRVDESDITFALQEIRFFRNCL 504


>AT2G29680.2 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTROL
           6) | chr2:12689586-12692854 FORWARD
          Length = 508

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/281 (68%), Positives = 228/281 (81%), Gaps = 18/281 (6%)

Query: 1   LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMV 60
           LIIADE+DYLIT+DR VLH+LFMLTT P SRCILIGVANAIDLADRFLP+L+SLNCKP+V
Sbjct: 245 LIIADEMDYLITRDRGVLHELFMLTTLPLSRCILIGVANAIDLADRFLPKLKSLNCKPLV 304

Query: 61  VTFRAYSKEQILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEIL 120
           VTFRAYSK+QILRILQERL+ALP+  F   ALE+CARKV+AASGDMRKALCVCRSA+EIL
Sbjct: 305 VTFRAYSKDQILRILQERLVALPFVAFQSNALEICARKVSAASGDMRKALCVCRSALEIL 364

Query: 121 EAELRESTGNLNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDT 180
           E E+R S        +D+E       P G   E Q   +V++DHM  ALSK ++SPIVDT
Sbjct: 365 EIEVRGS--------IDQE-------PKGPVPECQ---VVKMDHMIAALSKTFKSPIVDT 406

Query: 181 IQSLPQHQQIILCAAVKFFRGGKKDTIVGELNKYYIDVCKSTMIPPVGISEFLSMCRVLN 240
           IQSLPQHQQII+C+A K FRG KKD  + ELNK Y+++CKS+MI P GI+EF +MC VLN
Sbjct: 407 IQSLPQHQQIIVCSAAKAFRGSKKDRTIAELNKLYLEICKSSMITPAGITEFSNMCTVLN 466

Query: 241 DQGLLKLGQSRDDKLRRLMLKVDAADIIFALQGVRFFRNCL 281
           DQG+LKL  +RDDKL+R+ L+VD ADI FAL+ +RFFRNCL
Sbjct: 467 DQGILKLSLARDDKLKRVSLRVDEADITFALKEIRFFRNCL 507


>AT2G29680.1 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTROL
           6) | chr2:12689586-12692854 FORWARD
          Length = 539

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/312 (61%), Positives = 228/312 (73%), Gaps = 49/312 (15%)

Query: 1   LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIG------------------------ 36
           LIIADE+DYLIT+DR VLH+LFMLTT P SRCILIG                        
Sbjct: 245 LIIADEMDYLITRDRGVLHELFMLTTLPLSRCILIGTVFCVINVHFLKSVSYGQTSFKFK 304

Query: 37  -------VANAIDLADRFLPRLQSLNCKPMVVTFRAYSKEQILRILQERLMALPWTTFHP 89
                  VANAIDLADRFLP+L+SLNCKP+VVTFRAYSK+QILRILQERL+ALP+  F  
Sbjct: 305 VRICPPGVANAIDLADRFLPKLKSLNCKPLVVTFRAYSKDQILRILQERLVALPFVAFQS 364

Query: 90  PALELCARKVAAASGDMRKALCVCRSAIEILEAELRESTGNLNSFAVDKELSHQQTAPAG 149
            ALE+CARKV+AASGDMRKALCVCRSA+EILE E+R S        +D+E       P G
Sbjct: 365 NALEICARKVSAASGDMRKALCVCRSALEILEIEVRGS--------IDQE-------PKG 409

Query: 150 EFFEKQDYSIVRIDHMAVALSKAYRSPIVDTIQSLPQHQQIILCAAVKFFRGGKKDTIVG 209
              E Q   +V++DHM  ALSK ++SPIVDTIQSLPQHQQII+C+A K FRG KKD  + 
Sbjct: 410 PVPECQ---VVKMDHMIAALSKTFKSPIVDTIQSLPQHQQIIVCSAAKAFRGSKKDRTIA 466

Query: 210 ELNKYYIDVCKSTMIPPVGISEFLSMCRVLNDQGLLKLGQSRDDKLRRLMLKVDAADIIF 269
           ELNK Y+++CKS+MI P GI+EF +MC VLNDQG+LKL  +RDDKL+R+ L+VD ADI F
Sbjct: 467 ELNKLYLEICKSSMITPAGITEFSNMCTVLNDQGILKLSLARDDKLKRVSLRVDEADITF 526

Query: 270 ALQGVRFFRNCL 281
           AL+ +RFFRNCL
Sbjct: 527 ALKEIRFFRNCL 538


>AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITION
           COMPLEX 1); DNA binding / double-stranded methylated DNA
           binding | chr4:8422236-8424665 FORWARD
          Length = 809

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 134/273 (49%), Gaps = 28/273 (10%)

Query: 1   LIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMV 60
           +++ DELD L+T++++VL+++    T P S+ +++G+AN +DL ++ LPR+ S       
Sbjct: 552 ILLIDELDVLVTRNQSVLYNILDWPTKPNSKLVVLGIANTMDLPEKLLPRISS-RMGIQR 610

Query: 61  VTFRAYSKEQILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEIL 120
           + F  Y+  Q+  I+  RL  +    F   A+E  +RKVAA SGD R+AL +CR A E+ 
Sbjct: 611 LCFGPYNHRQLQEIISTRLEGI--NAFEKTAIEFASRKVAAISGDARRALEICRRAAEVA 668

Query: 121 EAELRESTGNLNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDT 180
           +  L++S  +  S                         +V +  + VA+ + +++P +  
Sbjct: 669 DYRLKKSNISAKS------------------------QLVIMADVEVAIQEMFQAPHIQV 704

Query: 181 IQSLPQHQQIILCAAV-KFFRGGKKDTIVGELNKYYIDVCKSTMIPPVGISEFLSMCRVL 239
           ++S+ +  +I L A V + ++ G  +T    +      +C +      G    L +   L
Sbjct: 705 MKSVSKLSRIFLTAMVHELYKTGMAETSFDRVATTVSSICLTNGEAFPGWDILLKIGCDL 764

Query: 240 NDQGLLKLGQSRDDKLRRLMLKVDAADIIFALQ 272
            +  ++        +L++L L   + D+ FAL+
Sbjct: 765 GECRIVLCEPGEKHRLQKLQLNFPSDDVAFALK 797


>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF
           REPLICATION COMPLEX 1B); DNA binding / double-stranded
           methylated DNA binding / protein binding |
           chr4:7459812-7462253 REVERSE
          Length = 813

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 129/269 (47%), Gaps = 41/269 (15%)

Query: 11  ITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLQSLNCKPMVVTFRAYSKEQ 70
           +T++++VL+++    T P S+ +++G+AN +DL ++ LPR+ S       + F  Y+  Q
Sbjct: 567 VTRNQSVLYNILDWPTKPNSKLVVLGIANTMDLPEKLLPRISS-RMGIQRLCFGPYNHTQ 625

Query: 71  ILRILQERLMALPWTTFHPPALELCARKVAAASGDMRKALCVCRSAIEILEAELRESTGN 130
           +  I+  RL  +    F   A+E  +RKVAA SGD R+AL +CR A E+ +  L     N
Sbjct: 626 LQEIISTRLNGI--DAFEKTAIEFASRKVAAISGDARRALEICRRAAEVADHRL-----N 678

Query: 131 LNSFAVDKELSHQQTAPAGEFFEKQDYSIVRIDHMAVALSKAYRSPIVDTIQSLPQHQQI 190
            N  A ++                    +V +  +  A+ + +++P +  ++S+ +  +I
Sbjct: 679 TNKSAKNQ--------------------LVIMADVEAAIQEMFQAPHIQVMKSVSKLSKI 718

Query: 191 ILCAAV-KFFRGGKKDTIVGELNKYYIDVCKSTMIPPVG------ISEFLSMCRVLNDQG 243
            L A V + ++ G  +T    +      +C +      G      I   L  CR++    
Sbjct: 719 FLTAMVHELYKTGMAETTFDRVATTVSSICLTNGEAFPGWDILLKIGCDLGECRII---- 774

Query: 244 LLKLGQSRDDKLRRLMLKVDAADIIFALQ 272
           L + G+    +L++L L   + D+ FAL+
Sbjct: 775 LCEPGEKH--RLQKLQLNFPSDDVAFALK 801