Jatropha Genome Database

JcCA0071981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071981.10 + phase: 0 /pseudo/partial
         (250 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09200.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B...   290   7e-79
AT3G11250.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0C...   289   1e-78
AT2G40010.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0A...   288   2e-78
AT3G09200.2 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B...   288   2e-78

>AT3G09200.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B) |
           chr3:2823364-2825020 REVERSE
          Length = 320

 Score =  290 bits (741), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 159/169 (94%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDVVV PG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIK+G+K
Sbjct: 109 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDK 168

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVFSPEVLDLTED LVE+F +G+SMVTSL+
Sbjct: 169 VGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLA 228

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L++S+PTLAAAPHMF+NAYKN L+++VATEYTFPQAE+VKE+L+DPSKF
Sbjct: 229 LAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277


>AT3G11250.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0C) |
           chr3:3521453-3522826 FORWARD
          Length = 323

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 159/169 (94%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDVVV PG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIK+G+K
Sbjct: 109 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDK 168

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVFSPEVLDLTED LVE+F +G+SMVTSL+
Sbjct: 169 VGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLA 228

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L++S+PTLAAAPHMF+NAYKN L+++VAT+YTFPQAE+VKEFL+DPSKF
Sbjct: 229 LAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277


>AT2G40010.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0A) |
           chr2:16708578-16710448 REVERSE
          Length = 317

 Score =  288 bits (738), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 159/169 (94%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDVVV PG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIKKG+K
Sbjct: 110 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVF+PEVL+LTEDDLVE+F  GVSM+T+LS
Sbjct: 170 VGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALS 229

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L+IS+PT+AAAPHMFLNAYKNVL+V++ATEY+FPQAE VKEFL+DP+KF
Sbjct: 230 LAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278


>AT3G09200.2 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B) |
           chr3:2823364-2825020 REVERSE
          Length = 287

 Score =  288 bits (738), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 159/169 (94%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDVVV PG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIK+G+K
Sbjct: 76  VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDK 135

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVFSPEVLDLTED LVE+F +G+SMVTSL+
Sbjct: 136 VGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLA 195

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L++S+PTLAAAPHMF+NAYKN L+++VATEYTFPQAE+VKE+L+DPSKF
Sbjct: 196 LAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 244