Jatropha Genome Database

JcCA0071791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071791.10 - phase: 0 /pseudo
         (411 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62080.2 | Symbols:  | SNF7 family protein | chr3:22986191-22...   314   6e-86
AT3G62080.1 | Symbols:  | SNF7 family protein | chr3:22986383-22...   314   6e-86

>AT3G62080.2 | Symbols:  | SNF7 family protein |
           chr3:22986191-22988517 FORWARD
          Length = 462

 Score =  314 bits (805), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 170/350 (48%), Positives = 232/350 (66%), Gaps = 25/350 (7%)

Query: 1   MDSSVVREFIKKEVPDWDDEVIATARFKAFSGQRSDWESKYLFWRDLILKVARHLGHLAI 60
           MD   V+EFI++EVPDWDDEV+A ARFKAFSGQRSDWE K+ FWRDLI+KV+R  G   I
Sbjct: 40  MDPEAVKEFIRREVPDWDDEVVAMARFKAFSGQRSDWELKFQFWRDLIIKVSRQFGLFII 99

Query: 61  RPSQVKNEWFNRGGLTPLCLDHVLFIMYSEGDIIRSVDLVDPRNGGLSQFFRKVRNLVVR 120
            P QVK  WF+RGG+TPLC+D V+ +M+SEGD++R  DL DP +G +++  R V+NL+V+
Sbjct: 100 DPVQVKKAWFDRGGMTPLCIDDVVLLMHSEGDVVRISDLDDPGSGRIARLLRTVKNLMVQ 159

Query: 121 STTSPEVMLEDCVILTVLLREKATEVIKFYLKVIGHLHA--LLLXRSFRTCVEHQ----- 173
                E +LE+ ++L  LL+EKA +V+K   +  GH  +  ++  + FR           
Sbjct: 160 QPVKQEEILENTLVLVPLLKEKAADVVKILSE--GHWTSTCVVTLKKFRNLCNGSNEASA 217

Query: 174 -MKHL----QFXVIYLDSG-----------KHAISRFIRRNXXSLHLIWTTEKLQKQVDV 217
            + HL    +   I ++ G           + A+      +   LHL+ TTEKLQ Q++V
Sbjct: 218 VLSHLSGCGKAHKISINRGELIEGVKVSFSQTALPGISTLDCDILHLLRTTEKLQDQLEV 277

Query: 218 IDQRYEISRKLALASLKSGNKKMALRHAREMKLASENREKCTSLLNRVDGVLNIIMNAES 277
           +DQR E S+K ALASLKSG++K+ALRHARE+K+ +E+REKCTSLLNRV+ VLN I ++ES
Sbjct: 278 MDQRCEKSKKSALASLKSGHRKVALRHARELKVVTESREKCTSLLNRVEEVLNTIADSES 337

Query: 278 TKKVTEAIQIGAQAMKQNKITXXXXXXXXXXXXXSIDSQKQVEKALESTP 327
           TK V+EAI+ GA+ MK  KI+             +I+SQKQVEKALES P
Sbjct: 338 TKMVSEAIKTGARVMKDIKISADDVHDYLEELEETIESQKQVEKALESAP 387


>AT3G62080.1 | Symbols:  | SNF7 family protein |
           chr3:22986383-22988517 FORWARD
          Length = 423

 Score =  314 bits (805), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 170/350 (48%), Positives = 232/350 (66%), Gaps = 25/350 (7%)

Query: 1   MDSSVVREFIKKEVPDWDDEVIATARFKAFSGQRSDWESKYLFWRDLILKVARHLGHLAI 60
           MD   V+EFI++EVPDWDDEV+A ARFKAFSGQRSDWE K+ FWRDLI+KV+R  G   I
Sbjct: 1   MDPEAVKEFIRREVPDWDDEVVAMARFKAFSGQRSDWELKFQFWRDLIIKVSRQFGLFII 60

Query: 61  RPSQVKNEWFNRGGLTPLCLDHVLFIMYSEGDIIRSVDLVDPRNGGLSQFFRKVRNLVVR 120
            P QVK  WF+RGG+TPLC+D V+ +M+SEGD++R  DL DP +G +++  R V+NL+V+
Sbjct: 61  DPVQVKKAWFDRGGMTPLCIDDVVLLMHSEGDVVRISDLDDPGSGRIARLLRTVKNLMVQ 120

Query: 121 STTSPEVMLEDCVILTVLLREKATEVIKFYLKVIGHLHA--LLLXRSFRTCVEHQ----- 173
                E +LE+ ++L  LL+EKA +V+K   +  GH  +  ++  + FR           
Sbjct: 121 QPVKQEEILENTLVLVPLLKEKAADVVKILSE--GHWTSTCVVTLKKFRNLCNGSNEASA 178

Query: 174 -MKHL----QFXVIYLDSG-----------KHAISRFIRRNXXSLHLIWTTEKLQKQVDV 217
            + HL    +   I ++ G           + A+      +   LHL+ TTEKLQ Q++V
Sbjct: 179 VLSHLSGCGKAHKISINRGELIEGVKVSFSQTALPGISTLDCDILHLLRTTEKLQDQLEV 238

Query: 218 IDQRYEISRKLALASLKSGNKKMALRHAREMKLASENREKCTSLLNRVDGVLNIIMNAES 277
           +DQR E S+K ALASLKSG++K+ALRHARE+K+ +E+REKCTSLLNRV+ VLN I ++ES
Sbjct: 239 MDQRCEKSKKSALASLKSGHRKVALRHARELKVVTESREKCTSLLNRVEEVLNTIADSES 298

Query: 278 TKKVTEAIQIGAQAMKQNKITXXXXXXXXXXXXXSIDSQKQVEKALESTP 327
           TK V+EAI+ GA+ MK  KI+             +I+SQKQVEKALES P
Sbjct: 299 TKMVSEAIKTGARVMKDIKISADDVHDYLEELEETIESQKQVEKALESAP 348