Jatropha Genome Database

JcCA0071111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071111.10 - phase: 0 /partial/short
         (46 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13430.1 | Symbols: IIL1 | IIL1 (ISOPROPYL MALATE ISOMERASE L...    60   3e-10

>AT4G13430.1 | Symbols: IIL1 | IIL1 (ISOPROPYL MALATE ISOMERASE
           LARGE SUBUNIT 1); 4 iron, 4 sulfur cluster binding /
           hydro-lyase/ lyase | chr4:7804194-7807789 REVERSE
          Length = 509

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M MT KILARA+EK+ ++PG+N W NVD  +      PGAFGIFKREFG
Sbjct: 67  MTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFG 115