Jatropha Genome Database

JcCA0066791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066791.10 + phase: 1 /TE/partial
         (1652 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01050.1 | Symbols:  | nucleic acid binding / zinc ion bindin...    93   2e-18
AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...    69   2e-11
ATMG01250.1 | Symbols: ORF102 | hypothetical protein | chrM:3105...    61   6e-09

>AT2G01050.1 | Symbols:  | nucleic acid binding / zinc ion binding |
           chr2:68337-69884 REVERSE
          Length = 515

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 67/135 (49%)

Query: 55  YMVGGQPLYIQKXKPSFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIG 114
           + V G  L +Q     F P    I +  +W+RL   P  +Y+  +L   A  +G P+K+ 
Sbjct: 138 WRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLKVD 197

Query: 115 RQTALATGGRFARVCVELNLAQPLIPRVFVGGAWRRVEYEGIISACSSCGRVGHRSESCS 174
             T     GRFARVC+E+NLA+PL   V + G    V YEG+   CSSCG  GH   SC 
Sbjct: 198 MNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYFVAYEGLSKICSSCGIYGHLVHSCP 257

Query: 175 DATVDVVEAVKEAPT 189
              V  V A  E  T
Sbjct: 258 RNVVVKVSAGAETVT 272


>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
            RNA-dependent DNA polymerase, putative |
            chr4:14333528-14335255 FORWARD
          Length = 575

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 5/148 (3%)

Query: 1290 SLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSA 1349
            +LP Y M    LP ++C  +  +  +F+W +  E   MH   W++L   +  GG+ F+  
Sbjct: 2    ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 1350 RLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPP---AVQVSDSSTWKGIIRSFN 1406
              FN+ LLGK  W++L     L  +V   +Y   H   P    +    S  WK I  S  
Sbjct: 62   EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF--HKSDPLNAPLGSRPSFVWKSIHASQE 119

Query: 1407 TLQSHVRWRVGNGQQISXWYDSWLSMGP 1434
             L+   R  VGNG+ I  W   WL   P
Sbjct: 120  ILRQGARAVVGNGEDIIIWRHKWLDSKP 147


>ATMG01250.1 | Symbols: ORF102 | hypothetical protein |
            chrM:310514-310882 FORWARD
          Length = 122

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 42/72 (58%)

Query: 1105 FSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKG 1164
            F L  + NG+P    + + GLRQGDPLSPYLF+L  E LS L  +   +     +  S  
Sbjct: 8    FYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNN 67

Query: 1165 GPPISHLLFADD 1176
             P I+HLLFADD
Sbjct: 68   SPRINHLLFADD 79