Jatropha Genome Database

JcCA0066751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066751.20 + phase: 0 
         (303 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00170.1 | Symbols: RPOC2 | RNA polymerase beta' subunit-2 | ...   513   e-146

>ATCG00170.1 | Symbols: RPOC2 | RNA polymerase beta' subunit-2 |
            chrC:15938-20068 REVERSE
          Length = 1376

 Score =  513 bits (1321), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/300 (86%), Positives = 275/300 (91%), Gaps = 5/300 (1%)

Query: 1    MAKNGPHLKSGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
            +AK  PHLKSGQV+IV+ DS VIRSAKPYLA PGA VHGHY EI YEGDTLVTF+YEKSR
Sbjct: 1074 IAKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSR 1133

Query: 61   SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
            SGDITQGLPKVEQVLEVRSIDSIS++LEKR++GWN+CITRILGIPWGFLIGAELTIVQSR
Sbjct: 1134 SGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSR 1193

Query: 121  ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 180
            ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTG
Sbjct: 1194 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTG 1253

Query: 181  RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
            RALEEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
Sbjct: 1254 RALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1313

Query: 241  GGMIPGGTGF-KGLVQGSRQHNNIPLKTKKKN--LFEGEFRDRDILFHHRELFDSCISKN 297
            GG+IP GTGF KGLV  SRQH NI L+ K KN  LFEG+   RDILF+HRE  DS ISK+
Sbjct: 1314 GGVIPAGTGFNKGLVHCSRQHTNIILEKKTKNLALFEGDM--RDILFYHREFCDSSISKS 1371