Jatropha Genome Database

JcCA0066701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066701.20 + phase: 1 /TE/partial
         (800 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG01250.1 | Symbols: ORF102 | hypothetical protein | chrM:3105...    84   4e-16
AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymer...    60   4e-09
AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    60   6e-09

>ATMG01250.1 | Symbols: ORF102 | hypothetical protein |
           chrM:310514-310882 FORWARD
          Length = 122

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 51/67 (76%)

Query: 575 LNGIPVGPISPARGLRQGDPISPYLFLLCAEGLSALFRDAEERRLIHGCRVGRGCPRVSH 634
           +NG P G ++P+RGLRQGDP+SPYLF+LC E LS L R A+E+  + G RV    PR++H
Sbjct: 14  INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73

Query: 635 LLFANDS 641
           LLFA+D+
Sbjct: 74  LLFADDT 80


>AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymerase
           | chr4:11045912-11047716 FORWARD
          Length = 376

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 503 TDNVCVAFETIHNLKNRRCGDLGYCALKIDISKAYDRVSWDYLSDVMHCLGFPAAWI 559
           TDN+    E +H+++ R+ G  G+  LK+D+ KAYDR+ WDYL D +   GFP  W+
Sbjct: 27  TDNIVFVQEAVHSMR-RKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVWL 82


>AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           RNA-directed DNA polymerase (reverse transcriptase),
           related (InterPro:IPR015706),
           Endonuclease/exonuclease/phosphatase
           (InterPro:IPR005135); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G40390.1); Has 2614
           Blast hits to 2551 proteins in 44 species: Archae - 0;
           Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086;
           Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
           | chr1:16528880-16531065 REVERSE
          Length = 626

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 260 KEEWNKILLTEEIRKKQQAKLFWFKYGDKNSKYFHXXXXXXXXXXXXXXXXXSDGFVTSN 319
           +++WN      E   +Q++++ W + GD N+++FH                  D     N
Sbjct: 421 RKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVEN 480

Query: 320 HGEMEVLVKDYFSELFRAERQ---PDRSSLLRLFQK-RVTDSDAASLLAPFRKDEFREDL 375
             +++ ++  Y++ L  ++     PD    ++     R  D+ A+ L A     E    +
Sbjct: 481 VTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAV 540

Query: 376 FSMHPDKAPGPDGLNPAFLQKYWHIMGNAIVLNAVDWLQRGIFPSDLSLTNIVLILKI 433
           F+M  +KAPGPD     F  + W ++ ++ +    ++ + G      + T I LI K+
Sbjct: 541 FAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKV 598