Jatropha Genome Database

JcCA0066671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.20 + phase: 0 /pseudo
         (501 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25010.1 | Symbols:  | unknown protein | chr2:10631691-106335...    70   5e-12
AT1G17930.1 | Symbols:  | unknown protein | chr1:6166638-6168432...    62   7e-10
AT2G04865.1 | Symbols:  | unknown protein | chr2:1712149-1714599...    49   6e-06

>AT2G25010.1 | Symbols:  | unknown protein | chr2:10631691-10633547
           FORWARD
          Length = 509

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 28/257 (10%)

Query: 30  IINPSRLGYLRHFDACRNSHKELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPF 89
           +++ +  GY R      + +  L+ AL ERW   TNTFH   GEMT+T  + +++ G+  
Sbjct: 54  LVDKAGFGYFRKIGP-MSLNNSLISALVERWRRETNTFHLPLGEMTITLDEVALVLGLEI 112

Query: 90  GIRPIELYDDWRTEVSPDRMVELIGIDLPRIVGPGSATPALSVSR---RWL---YLQAPG 143
              PI       ++V  +  +++ G  L ++  P +A   ++ SR    WL   + + P 
Sbjct: 113 DGDPI-----VGSKVGDEVAMDMCGRLLGKL--PSAANKEVNCSRVKLNWLKRTFSECP- 164

Query: 144 IYARHRRGELTASQVARFTLLLMFASTFWSNRKERFNPSILKSLENLAHLTEYDWAGAIL 203
                   ++       + L L+ ++ F +   ++ +   L   E+      Y W  A L
Sbjct: 165 ---EDASFDVVKCHTRAYLLYLIGSTIFATTDGDKVSVKYLPLFEDFDQAGRYAWGAAAL 221

Query: 204 SRMYDDMCDLS-RSHCKLSGTYYFWEIWAFEYFPYTRPEQIQADLGLGLVPLAWRWY--- 259
           + +Y  + + S +S   + G     + W++ +    RPE+ +A       PLA  W    
Sbjct: 222 ACLYRALGNASLKSQSNICGCLTLLQCWSYFHLDIGRPEKSEA-----CFPLALLWKGKG 276

Query: 260 -RTNLHTSRHRHSLKDL 275
            R+    S +R  L DL
Sbjct: 277 SRSKTDLSEYRRELDDL 293


>AT1G17930.1 | Symbols:  | unknown protein | chr1:6166638-6168432
           REVERSE
          Length = 478

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 18/252 (7%)

Query: 29  AIINPSRLGYLRHFDACRNSHKELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIP 88
           A++  +  G+ R   +  + +  L+ AL ERW   TNTFHF  GEMT+T  + S+I G+ 
Sbjct: 44  ALVEKAGFGWFRLVGSI-SLNNSLISALVERWRRETNTFHFPCGEMTITLDEVSLILGLA 102

Query: 89  FGIRPIELYDDWRTEVSPDRMVELIGIDLPRIVGPGSATPALSVSRRWLYLQAPGIYARH 148
              +P+    + + E      + L+G  LP+    G+      V+ +WL       +A  
Sbjct: 103 VDGKPVVGVKE-KDEDPSQVCLRLLG-KLPKGELSGN-----RVTAKWLKES----FAEC 151

Query: 149 RRGELTASQV---ARFTLLLMFAST-FWSNRKERFNPSILKSLENLAHLTEYDWAGAILS 204
            +G  T  ++    R  L+ +  ST F +    + +   L   E+     EY W  A L+
Sbjct: 152 PKG-ATMKEIEYHTRAYLIYIVGSTIFATTDPSKISVDYLILFEDFEKAGEYAWGAAALA 210

Query: 205 RMYDDMCDLS-RSHCKLSGTYYFWEIWAFEYFPYTRPEQIQADLGLGLVPLAWRWYRTNL 263
            +Y  + + S RS   + G     + W++ +    RP++      L L+    +  R+  
Sbjct: 211 FLYRQIGNASQRSQSIIGGCLTLLQCWSYFHLNIDRPKRTTRQFPLALLWKGRQQSRSKN 270

Query: 264 HTSRHRHSLKDL 275
              ++R +L DL
Sbjct: 271 DLFKYRKALDDL 282


>AT2G04865.1 | Symbols:  | unknown protein | chr2:1712149-1714599
           FORWARD
          Length = 667

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 45/230 (19%)

Query: 30  IINPSRLGYLRHFDACRNSHKELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPF 89
           ++  +  G+LR   A  +    L+ AL ERW   TNTFHF+ GEMT+T  D +++ G+  
Sbjct: 56  LVERAGFGFLRRIPAI-SLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGI 114

Query: 90  GIRPIELYDDWRTEVSPDRMVELIGID-------LPRIVGPGSATPALS---VSRRWL-- 137
             +P+                  IG+          R +G   A+ + S   V   WL  
Sbjct: 115 DGKPV------------------IGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKD 156

Query: 138 -YLQAPGIYARHRRGELTASQVARFT---LLLMFASTFWSNRKERFNPSI-LKSLENLAH 192
            + + P         + +  +V R T   LL +  ST +S       P + L   E+   
Sbjct: 157 NFSECP--------DDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDD 208

Query: 193 LTEYDWAGAILSRMYDDMCDLS-RSHCKLSGTYYFWEIWAFEYFPYTRPE 241
              + W  A L+ +Y  + + S +S   + G     + W++ +    RP+
Sbjct: 209 AGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNIGRPK 258