Jatropha Genome Database

JcCA0066671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.10 - phase: 2 /partial
         (78 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62270.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   116   3e-27

>AT5G62270.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: mucin-related (TAIR:AT2G02880.1); Has
           48 Blast hits to 48 proteins in 16 species: Archae - 0;
           Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 40;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr5:25012227-25014007 FORWARD
          Length = 383

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 58/63 (92%)

Query: 1   FFNSHDREFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN 60
           FF SHDREFHVASL YKPDFKVMPEGWDGTIKD+DEVHYEIS KED+MLY+EFV++  FN
Sbjct: 251 FFISHDREFHVASLNYKPDFKVMPEGWDGTIKDMDEVHYEISKKEDDMLYEEFVRRFEFN 310

Query: 61  KMK 63
           KMK
Sbjct: 311 KMK 313