Jatropha Genome Database

JcCA0066651.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066651.20 + phase: 0 /pseudo
         (368 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding / ...   404   e-113
AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family ...    79   4e-15
AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding ...    76   4e-14
AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding / DNA-de...    67   1e-11
AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor, ...    66   3e-11
AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor, ...    64   2e-10
AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding / ...    60   2e-09
AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family ...    49   5e-06

>AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr3:2961314-2966166 REVERSE
          Length = 777

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/323 (61%), Positives = 248/323 (76%), Gaps = 5/323 (1%)

Query: 16  RPMTDASNSM---EILAVYFPTND-FSVDEDKLMLISDLIHFFSTSLGQDLASQVKEENG 71
           RP +   +S+   +ILAVY   N+  ++DEDKL L ++LI  FS S G+D+ SQV E+ G
Sbjct: 13  RPESTGIDSLGIGKILAVYIKDNENLAIDEDKLQLTAELIRVFSASPGRDIVSQVNEDGG 72

Query: 72  -AFFLPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEENILQVGAKIN 130
            +F L +D +QF+KI D+E F++ LE+ PK  + C+ AAVHKVL  + E N  +   KIN
Sbjct: 73  GSFSLSLDLQQFKKISDIENFFINLEDNPKGVIPCMNAAVHKVLFDQWETNEFENVMKIN 132

Query: 131 IRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFP 190
           +RLHNYPES I+LKNL+AAYI KLV+V GTVVKVSTV+PLV QM+FDC KCK+ I R F 
Sbjct: 133 VRLHNYPESSISLKNLRAAYIGKLVTVHGTVVKVSTVKPLVTQMAFDCGKCKTGITREFT 192

Query: 191 DGKFSPPTICNLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELT 250
           DGKFSPP  C+ +GCKS+TF PIRSSAQ +DFQKIR+QEL + EDHEEGRVPRTVECEL 
Sbjct: 193 DGKFSPPLKCDSHGCKSKTFTPIRSSAQTIDFQKIRVQELQKPEDHEEGRVPRTVECELM 252

Query: 251 EDLVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYYLYLEGVSIKNSKSQSTSF 310
           EDLVD CIPGDVVTVTGII  INNY+DIGGGK K KNQGFYYL++E VS+KN+K QS   
Sbjct: 253 EDLVDICIPGDVVTVTGIIGVINNYMDIGGGKSKTKNQGFYYLFIEAVSVKNTKRQSAFE 312

Query: 311 DFQDSKSNARATELSDLFSFSPR 333
           + +DS S+A+  ++ DL+SFS R
Sbjct: 313 NSEDSSSSAQTADVGDLYSFSQR 335


>AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family
           protein / MCM family protein | chr5:18006431-18010542
           REVERSE
          Length = 831

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 129 INIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARI 188
           IN+  +N P +   L+ L  A I KLVSV G V + S VRP ++  +F C  C S I  +
Sbjct: 107 INVSFYNLPFTK-RLRELTTAEIGKLVSVTGVVTRTSEVRPELLYGTFKCLDCGSVIKNV 165

Query: 189 FPDGKFSPPTICNLNGCKSRT-FHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVEC 247
               K++ PTIC    C +R  +  +R  ++  D+Q++R+QE   S++   G +PR+++ 
Sbjct: 166 EQQFKYTQPTICVSPTCLNRARWALLRQESKFADWQRVRMQET--SKEIPAGSLPRSLDV 223

Query: 248 ELTEDLVDACIPGDVVTVTGIIRTI 272
            L  ++V+    GD V  TG +  I
Sbjct: 224 ILRHEIVEQARAGDTVIFTGTVVVI 248


>AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding /
           DNA binding / DNA-dependent ATPase/
           nucleoside-triphosphatase/ nucleotide binding |
           chr4:901484-905297 FORWARD
          Length = 716

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 22/207 (10%)

Query: 143 LKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNI-----ARIFPDGKFSPP 197
           ++ +KA++I +LV + G V + S V+PL+    + CE C   I     +R+F      P 
Sbjct: 143 IREVKASHIGQLVRISGIVTRCSDVKPLMAVAVYTCEDCGHEIYQEVTSRVFMPLFKCPS 202

Query: 198 TICNLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELTEDLVDAC 257
           + C LN         +R+S + + FQ+ ++QEL  +E   +G +PR++   L  +L    
Sbjct: 203 SRCRLNSKAGNPILQLRAS-KFLKFQEAKMQEL--AEHVPKGHIPRSMTVHLRGELTRKV 259

Query: 258 IPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYY-LYLEGVSIKNSKSQSTSFDFQDSK 316
            PGDVV  +GI      ++ I     K    G     YLE  S+ + K +   ++FQ  +
Sbjct: 260 SPGDVVEFSGI------FLPIPYTGFKALRAGLVADTYLEATSVTHFKKKYEEYEFQKDE 313

Query: 317 SN--ARATELSDLF-----SFSPRGFG 336
               AR  E  D++     S +P  +G
Sbjct: 314 EEQIARLAEDGDIYNKLSRSLAPEIYG 340


>AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding /
           DNA-dependent ATPase | chr1:16970291-16974457 FORWARD
          Length = 936

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 12/197 (6%)

Query: 75  LPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEENILQVGAKINIRLH 134
           L ID+++F  +       + L + P+  L  +     KV+      N   +  KI +R+ 
Sbjct: 256 LEIDYKEFIHVH--PNIAIWLADAPQPVLEVMEEVSEKVI-FDLHPNYKNIHTKIYVRVT 312

Query: 135 NYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKF 194
           N P +   ++N++  +++ ++ + G V + S V P + Q+ +DC KC + +   F +  +
Sbjct: 313 NLPVN-DQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAVLGPFFQNS-Y 370

Query: 195 SPPTICNLNGCKSRTFHPIRSSAQAV---DFQKIRIQELLRSEDHEEGRVPRTVECELTE 251
           S   + + + C+S+   P   + +     ++QK+ IQE   +     GR+PR  E  L  
Sbjct: 371 SEVKVGSCSECQSKG--PFTVNVEQTIYRNYQKLTIQESPGTV--PAGRLPRHKEVILLN 426

Query: 252 DLVDACIPGDVVTVTGI 268
           DL+D   PG+ + VTGI
Sbjct: 427 DLIDCARPGEEIEVTGI 443


>AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor,
           putative | chr2:7126536-7130665 REVERSE
          Length = 847

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 10/195 (5%)

Query: 129 INIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARI 188
           + +R+ N   S  +++NL  + I+K++S++G +++ S++ P + +  F C  C      I
Sbjct: 223 VQVRIFNLRTS-TSMRNLNPSDIEKMISLKGMIIRSSSIIPEIREAVFRCLVCGYFSDPI 281

Query: 189 FPD-GKFSPPTICNLNGCKSR-TFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVE 246
             D GK S P  C    C ++ +   + +  +  D Q +R+QE    ++  EG  P TV 
Sbjct: 282 IVDRGKISEPPTCLKQECMTKNSMTLVHNRCRFADKQIVRLQET--PDEIPEGGTPHTVS 339

Query: 247 CELTEDLVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYYLYLEGVSIKN-SKS 305
             L + LVD   PGD + VTGI R +   V    G      +  +  Y++ + IK  SK 
Sbjct: 340 LLLHDKLVDNGKPGDRIEVTGIYRAMTVRV----GPAHRTVKSVFKTYIDCLHIKKASKL 395

Query: 306 QSTSFDFQDSKSNAR 320
           + ++ D  D  ++ R
Sbjct: 396 RMSAEDPMDVDNSLR 410


>AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor,
           putative | chr5:18769902-18773606 REVERSE
          Length = 776

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 34/215 (15%)

Query: 140 MIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKFSPPTI 199
           ++  + L + +I  +V V G V K S VRP VV+    C        R + D       I
Sbjct: 101 VVTPRELLSDFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPSTGEFTNRDYRD-------I 153

Query: 200 CNLNGCKSRTFHPIRSSAQAV-----------DFQKIRIQELLRSEDHEEGRVPRTVECE 248
            +  G  + + +P R     +           D Q + IQE+   E+   G++PR+V+  
Sbjct: 154 TSHAGLPTGSVYPTRDDKGNLLVTEYGLCKYKDHQTLSIQEV--PENAAPGQLPRSVDVI 211

Query: 249 LTEDLVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFY--YLYLEGVSIKNSKSQ 306
             +DLVD+C PGD V+V GI + +        GK KG   G +   L    +++ N ++ 
Sbjct: 212 AEDDLVDSCKPGDRVSVFGIYKALP-------GKSKGSVNGVFRTILIANNIALLNKEAN 264

Query: 307 S---TSFDFQDSKSNARATELSDLF--SFSPRGFG 336
           +   T  D  + K+ AR  +  DL   S +P  +G
Sbjct: 265 APIYTKQDLDNIKNIARRDDAFDLLARSLAPSIYG 299


>AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr2:5909240-5913817 FORWARD
          Length = 646

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%)

Query: 133 LHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPD- 191
           L   PE+  ++  ++  +   L+ ++GTV++   V+    +  + C KCK ++  IFP+ 
Sbjct: 110 LERSPETFPSIGRVRVKHRGILMMLKGTVIRSGAVKMYEGEKMYRCRKCK-HMFPIFPEL 168

Query: 192 ---GKFSPPTIC---NLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTV 245
                   P  C       C+   F P+  +    D+Q+I+IQE   ++    G +PR++
Sbjct: 169 ESINSIVKPPFCPSQRSKACEGTNFDPVDDTVTRHDYQEIKIQE--NTQVLGVGVIPRSI 226

Query: 246 ECELTEDLVDACIPGDVVTVTGII 269
              L +DLVD    GD V V+GI+
Sbjct: 227 LVVLKDDLVDNVKAGDDVVVSGIL 250


>AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family
           protein / MCM family protein | chr2:3523379-3527388
           REVERSE
          Length = 727

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 14/141 (9%)

Query: 138 ESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFP-----DG 192
           E  ++++ L A YI KLV + G  +  S V+     +   C+ CK    R  P      G
Sbjct: 129 EDPVSMRLLGAQYISKLVKISGISIAASRVKAKATYVFLVCKNCKKT--REVPCRPGLGG 186

Query: 193 KFSPPTICNL-----NGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVEC 247
              P +  N+       C    +  +   +Q VD Q +++QE    ED   G +PR +  
Sbjct: 187 AIVPRSCDNIPQPGEEPCPLDPWMVVPDRSQYVDQQTLKLQE--NPEDVPTGELPRNMLL 244

Query: 248 ELTEDLVDACIPGDVVTVTGI 268
            +   LV   +PG  +TV GI
Sbjct: 245 SVDRHLVQTIVPGTRLTVMGI 265