Jatropha Genome Database

JcCA0066621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066621.20 - phase: 2 /partial
         (319 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | RPA1A ...   491   e-139
AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | RPA1A ...   491   e-139
AT5G45400.1 | Symbols:  | replication protein, putative | chr5:1...   409   e-114
AT4G19130.1 | Symbols:  | DNA binding / nucleic acid binding / z...   401   e-112
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70B (RPA70-KDA SUBU...   187   8e-48
AT5G61000.1 | Symbols:  | replication protein, putative | chr5:2...   181   5e-46
AT1G52950.1 | Symbols:  | replication protein-related | chr1:197...    68   7e-12

>AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | RPA1A
           (REPLICATION PROTEIN A 1A); DNA binding / nucleic acid
           binding | chr2:2585215-2587601 FORWARD
          Length = 640

 Score =  491 bits (1264), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/316 (73%), Positives = 278/316 (87%), Gaps = 1/316 (0%)

Query: 1   NAENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQ 60
           NAENN+I DVIG+VTSVNPSVPILRKNGMET RRILNLKD SG++VE+TL G+FCN++G+
Sbjct: 325 NAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGR 384

Query: 61  KLQEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNA 120
           +L+E+VDS   PVLA+KAGKVSDFSGKS+GTISSTQLFINPD PEA+ ++ WFD GG++ 
Sbjct: 385 QLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDT 444

Query: 121 TSVSISRDIMPGA-PKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACP 179
            S SISRD MPG   +NEIRK VSQIK+EGLGRSDKPDW+TV A I+F+KTD+FCYTACP
Sbjct: 445 ASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACP 504

Query: 180 LMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQ 239
           LMIGD+QCNKKVTRSG +RW CDRCNQE DECDYRYLLQ QIQDHTG+TW+TAFQE+GE+
Sbjct: 505 LMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEE 564

Query: 240 ILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKADK 299
           I+G PAK++Y +K EL+ E  FA+I+R  LF QY+ +LKIKEE YGDEQRVK+TVVK DK
Sbjct: 565 IMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDK 624

Query: 300 VDYSSESRYLLDLISK 315
           V+Y+SES+Y+LDL+ +
Sbjct: 625 VNYTSESKYMLDLLVR 640


>AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | RPA1A
           (REPLICATION PROTEIN A 1A); DNA binding / nucleic acid
           binding | chr2:2585215-2587601 FORWARD
          Length = 617

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/316 (73%), Positives = 278/316 (87%), Gaps = 1/316 (0%)

Query: 1   NAENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQ 60
           NAENN+I DVIG+VTSVNPSVPILRKNGMET RRILNLKD SG++VE+TL G+FCN++G+
Sbjct: 302 NAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGR 361

Query: 61  KLQEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNA 120
           +L+E+VDS   PVLA+KAGKVSDFSGKS+GTISSTQLFINPD PEA+ ++ WFD GG++ 
Sbjct: 362 QLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDT 421

Query: 121 TSVSISRDIMPGA-PKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACP 179
            S SISRD MPG   +NEIRK VSQIK+EGLGRSDKPDW+TV A I+F+KTD+FCYTACP
Sbjct: 422 ASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACP 481

Query: 180 LMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQ 239
           LMIGD+QCNKKVTRSG +RW CDRCNQE DECDYRYLLQ QIQDHTG+TW+TAFQE+GE+
Sbjct: 482 LMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEE 541

Query: 240 ILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKADK 299
           I+G PAK++Y +K EL+ E  FA+I+R  LF QY+ +LKIKEE YGDEQRVK+TVVK DK
Sbjct: 542 IMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDK 601

Query: 300 VDYSSESRYLLDLISK 315
           V+Y+SES+Y+LDL+ +
Sbjct: 602 VNYTSESKYMLDLLVR 617


>AT5G45400.1 | Symbols:  | replication protein, putative |
           chr5:18398990-18401644 FORWARD
          Length = 853

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 249/315 (79%), Gaps = 1/315 (0%)

Query: 1   NAENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQ 60
           N ENNS  DVIGIV+S++P+V I+RKN  E Q+R L LKD SGRSVE+T+ G+FCN EGQ
Sbjct: 426 NMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQ 485

Query: 61  KLQEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNA 120
           KLQ + DSGVFPVLA+KAG++ +F+GK + TI ++Q FI PD PEA  ++ W++R G+NA
Sbjct: 486 KLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREGRNA 545

Query: 121 TSVSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACPL 180
              SISR+   G  + E+RK ++QIKDE LG S+KPDW+TV A I+F+K + FCYTACP+
Sbjct: 546 HFTSISREFS-GVGRQEVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPI 604

Query: 181 MIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQI 240
           M GDR C+KKVT +G+  W+C++C++  DECDYRY+LQ Q+QDHT +TW TAFQE+GE+I
Sbjct: 605 MNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEI 664

Query: 241 LGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKADKV 300
           +G  AK++Y +K E QDE +F DI+RS+ F +Y+F+LKIKEE Y DEQRVK TVVKA+K+
Sbjct: 665 MGMSAKDLYYVKYENQDEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKL 724

Query: 301 DYSSESRYLLDLISK 315
           +YSS +R++L+ I K
Sbjct: 725 NYSSNTRFMLEAIDK 739


>AT4G19130.1 | Symbols:  | DNA binding / nucleic acid binding / zinc
           ion binding | chr4:10466618-10469092 REVERSE
          Length = 784

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 185/313 (59%), Positives = 250/313 (79%), Gaps = 1/313 (0%)

Query: 3   ENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKL 62
           ENN I DVIGIV+S++P+V I RKNG  T +R L LKD SGRSVE+T+ GDFCN EGQ+L
Sbjct: 358 ENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRL 417

Query: 63  QEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNATS 122
           Q + DSGVFPVLAVKAG++S+F+GK++ TI S+QLFI+PD  EA  +K+WF+R G++   
Sbjct: 418 QSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPC 477

Query: 123 VSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACPLMI 182
           +S+SR+   G+ K ++RKT+SQIKDE LG S+KPDW+TVSA I ++K D FCYTACP+M 
Sbjct: 478 ISLSRE-FSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMN 536

Query: 183 GDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQILG 242
           GDR C+KKVT +G+  W+C++C++  DECDYRY+LQ QIQDHT +T VTAFQE+GE+I+G
Sbjct: 537 GDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMG 596

Query: 243 YPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKADKVDY 302
             AK++Y +KNE +DE +F DI+R + F +Y F+LK+KEE + DEQRVK TVVK DK++Y
Sbjct: 597 ISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNY 656

Query: 303 SSESRYLLDLISK 315
           S+++R +L  + K
Sbjct: 657 SADTRTMLGAMDK 669


>AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70B (RPA70-KDA SUBUNIT
           B); DNA binding / nucleic acid binding |
           chr5:2572107-2574879 FORWARD
          Length = 604

 Score =  187 bits (475), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 180/319 (56%), Gaps = 19/319 (5%)

Query: 7   IFDVIGIVTSVNPSVPILRKNGMET-QRRILNLKDGSGRSVELTLGGDFCNKEGQKLQEI 65
           + DVIG+V SV+P++ I RKN  E   +R + L D + ++V ++L  D     GQ+L ++
Sbjct: 292 LIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQELLDM 351

Query: 66  VDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNATSVSI 125
            D+   PV+A+K+ KV  F G SL TIS + + INP+ PEA  +K W+D  G+  TS+S 
Sbjct: 352 ADN--HPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDAEGKE-TSMSA 408

Query: 126 SRDIMPGAPKNEIRKTVSQ-------IKDEGLGRSDKPDWVTVSARITFVKTD-TFCYTA 177
               M  +  N  R   S          +  LG  +KP + +  A I+F+K D T  Y A
Sbjct: 409 IGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGE-EKPVFFSTRAYISFIKPDQTMWYRA 467

Query: 178 CPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESG 237
           C      + CNKKVT + +S + C+ C ++  EC  RY++  ++ D TG TW++AF +  
Sbjct: 468 C------KTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEA 521

Query: 238 EQILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKA 297
           E+I+G  A ++  LK+E  +   F   L+   +  +LFR+ + ++ Y  E+R +ITV   
Sbjct: 522 EKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVRGV 581

Query: 298 DKVDYSSESRYLLDLISKH 316
             +D+++E+R LL  ISK+
Sbjct: 582 SPIDFAAETRLLLQDISKN 600


>AT5G61000.1 | Symbols:  | replication protein, putative |
           chr5:24549682-24552641 REVERSE
          Length = 629

 Score =  181 bits (459), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 178/316 (56%), Gaps = 17/316 (5%)

Query: 7   IFDVIGIVTSVNPSVPILRKNGMET-QRRILNLKDGSGRSVELTLGGDFCNKEGQKLQEI 65
           + D+IG+V SV+P++ I R+   E   +R + L D S ++V ++L  D     GQ+L ++
Sbjct: 316 LIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLATGIGQELLDM 375

Query: 66  VDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNATSVSI 125
            D    PV+A+K+ KV DF G SL TIS + + INP+ PEA  +K WFD  G+  +  SI
Sbjct: 376 ADQS--PVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWFDSEGKEISMSSI 433

Query: 126 SRDIMPGAPKNEIRKT------VSQIKDEGLGRSDKPDWVTVSARITFVKTD-TFCYTAC 178
              + P A KN  R        +S I        +KP + +  A I+F+K D T  Y AC
Sbjct: 434 GSGMSPSA-KNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQAC 492

Query: 179 PLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGE 238
                 + CNKKVT + +S + C+ C ++++EC  RY++  ++ D +G TW+++F +  E
Sbjct: 493 ------KTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAE 546

Query: 239 QILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKAD 298
           +ILG  A E+  LK+E  +   +   L+   +  ++FR+ + +  Y  E+R ++TV    
Sbjct: 547 KILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVA 606

Query: 299 KVDYSSESRYLLDLIS 314
            +D+++E+R LL  IS
Sbjct: 607 PLDFAAETRLLLQDIS 622


>AT1G52950.1 | Symbols:  | replication protein-related |
           chr1:19725483-19728007 FORWARD
          Length = 566

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 23/293 (7%)

Query: 3   ENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKL 62
           + N + +VIG + +V   + +L   G  T++    L+D     +  +L G F ++  +  
Sbjct: 132 DQNKLVNVIGQLVNVG-EIQLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKFADQIHKVS 190

Query: 63  QEIVDSGVFPVLAVKAGKVSDFSGKSLGTIS----STQLFINPDIPEAYSVKDWFDRGGQ 118
           +E V  G   +  ++  K+  +  K + +IS    ++++FINP + E    K+     G 
Sbjct: 191 KESV--GGIVICLIRWAKLGHY--KEIRSISNAFDASEVFINPILTEVEEFKNLLPSDGL 246

Query: 119 NATSVSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTAC 178
             T +       P   + E  K   +     L  S + + V +   I  +  D   Y   
Sbjct: 247 ALTIMEPKPRFQPLRVREERSKQFERKTIAELKASFEVEKVKIICSILSIDLDYSWYYYA 306

Query: 179 PLMIGDRQCNKKVTRSGNSR--------WQCDRCNQEFDECDYRYLLQAQIQDHTGITWV 230
            +     +CNKKV +S  +         ++CD+C  +    + RY L   I D+TG + +
Sbjct: 307 HI-----KCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMDNTGESKL 361

Query: 231 TAFQESGEQILGYPAKEMYLLKNELQDETR-FADILRSILFEQYLFRLKIKEE 282
             F    E I+G PA E+  + NE  DE +   D++++I+ + Y F + ++++
Sbjct: 362 MLFDSFVEPIIGCPATELLDVTNEQIDEPQPLPDVVKNIIGKTYQFLVCVEQD 414